Gene
| Gene Model ID | pfu_aug1.0_1163.1_65856 |
|---|---|
| Locus | scaffold1163.1 : 35755 ... 58485 : - |
| To GenomeBrowser | scaffold1163.1:35755..58485 |
| Genes list of scaffold | scaffold1163.1 |
| Synonym | pfu_aug2.0_205.1_17109 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_1163.1_65856.t1 | 1 | 1 | C2 | 2 | 44 | 2.0e-09 | 37.1 | 7.8e-13 | 3.9e-09 | 36.2 |
| pfu_aug1.0_1163.1_65856.t1 | 4 | 1 | WW | 119 | 125 | 1.9e-35 | 120.3 | 0.29 | 1400.0 | -0.8 |
| pfu_aug1.0_1163.1_65856.t1 | 4 | 2 | WW | 154 | 184 | 1.9e-35 | 120.3 | 1.7e-15 | 8.3e-12 | 44.7 |
| pfu_aug1.0_1163.1_65856.t1 | 4 | 3 | WW | 202 | 231 | 1.9e-35 | 120.3 | 1.3e-15 | 6.3e-12 | 45.1 |
| pfu_aug1.0_1163.1_65856.t1 | 4 | 4 | WW | 295 | 324 | 1.9e-35 | 120.3 | 2.8e-13 | 1.4e-09 | 37.6 |
| pfu_aug1.0_1163.1_65856.t1 | 1 | 1 | HECT | 377 | 541 | 0.0 | 188.6 | 0.0 | 0.0 | 188.0 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_1163.1_65856.t1 | gi|328705870|ref|XP_003242929.1| | PREDICTED: E3 ubiquitin-protein ligase NEDD4 isoform X2 [Acyrthosiphon pisum] | 0.0 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)| Libraries | EST count |
|---|---|
| >Embryonic/Larval stages | |
| mix | 1 |
| trochophore | 1 |
| >Adult tissues | |
| Dshape | 1 |
| adductorMuscle | 1 |
| mantle | 2 |
Transcript
| Transcript ID | pfu_aug1.0_1163.1_65856.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_1163.1_65856.t1 atgatccaccagacactgaatccaaaatggaacgaagaattcctatttagagtgaatcccagagacaatgctttattatt tgaagtttttgattccaacagagttacgagagatgacttccttgggctggtagagatccccctatcacatacctttatca acactgagaattcagatagtgacattcccactaaaaactacatccttagaccgcgcagttcaaggtcaagggtgaagggc tgtctactgctatatttagcctttgtgccgacagagtcggatgaaggtcaagaacaggaagaagaaactcaaaatgaggc tggtgctcaggacaactcggaggtcagtaatcagccgggctgggaaatggtggacttggaaaatgcaattaatgaatctg gagcttctggtcctacaaataaccaatcagaaacggctaactccactcctgccgagcccctacccccaggctgggaaaag aggatacacccaacaactaacaggatatattatatcaatcacaataccagaacaactcaatggaaaccgccaacaaacac cagtacaagaatgtctagggaagaacctgcaagcagtgatagtctaccagaagggtgggaggaaaaaacagactcaaatg gcagaacttactacattaacaccaacactcgtgtagttcaatggacaagacctggagtgtcgaacgaggatcatcaagca accatgagtcgtcgttggagggaagctgcggcagaaatgtatcgtaaccgtcgacacgtcagtcgagaggacaccatgag tatggttagtgaaacagcaataccttccgctcctcaagaaacaagggaagacaactctgctacgacagaagatgaggagc ctttacctgcaggatgggccatgggtgtggctcccagtggcagagtcttctatatagatcataatacagaacaaaccaca tgggaggacccacgacaaactatgcagcatcaccgtgtagccagtatgaggtcggcagcagaggctcctggattacaaca aagagcctcctctaatgaggacctcctcagaaacctaggaccactaccagaaagtaattttggaatttccacaaacattt ttattatttacaggttggtcattcgatggcgttttgtatcaagaatagaaaagcagatgaattctttaatgaaaggtttc acggctattgttccacagtctatgatacagatctttgatgaaaatgagttggagcttttgttgagcggtttacaagacat agacgtgaatgactggaagtccaactcggcttacaaaggagaatataatcctaaccatcctgttataatcaatttctgga aggctgtgtattccttcaacaatgagatgcgatcccgtctcctgcagtttgtcacaggaacttcccgagtgccgatgaat ggattccgagagttatacgggagtaacggaccacaactctttaccatagagaagtgggggacttctaataagttccctag agctcatacttgttttaatcgccttgacttgccgccatatgaaagttatcaagatctccgaaaaaagcttttatcagcag tggagaacacacaagggtttgagggagtggattaa |
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Protein
| Protein ID | pfu_aug1.0_1163.1_65856.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_1163.1_65856.t1 MIHQTLNPKWNEEFLFRVNPRDNALLFEVFDSNRVTRDDFLGLVEIPLSHTFINTENSDSDIPTKNYILRPRSSRSRVKG CLLLYLAFVPTESDEGQEQEEETQNEAGAQDNSEVSNQPGWEMVDLENAINESGASGPTNNQSETANSTPAEPLPPGWEK RIHPTTNRIYYINHNTRTTQWKPPTNTSTRMSREEPASSDSLPEGWEEKTDSNGRTYYINTNTRVVQWTRPGVSNEDHQA TMSRRWREAAAEMYRNRRHVSREDTMSMVSETAIPSAPQETREDNSATTEDEEPLPAGWAMGVAPSGRVFYIDHNTEQTT WEDPRQTMQHHRVASMRSAAEAPGLQQRASSNEDLLRNLGPLPESNFGISTNIFIIYRLVIRWRFVSRIEKQMNSLMKGF TAIVPQSMIQIFDENELELLLSGLQDIDVNDWKSNSAYKGEYNPNHPVIINFWKAVYSFNNEMRSRLLQFVTGTSRVPMN GFRELYGSNGPQLFTIEKWGTSNKFPRAHTCFNRLDLPPYESYQDLRKKLLSAVENTQGFEGVD |
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