Gene
| Gene Model ID | pfu_aug1.0_11631.1_24932 |
|---|---|
| Locus | scaffold11631.1 : 11198 ... 14325 : - |
| To GenomeBrowser | scaffold11631.1:11198..14325 |
| Genes list of scaffold | scaffold11631.1 |
| Synonym | pfu_aug2.0_753.1_11157 |
Manual annotation
| Study field | Transcription Factors |
|---|---|
| Gene name | Pfu-HES3 |
| Description | Best hit to EAW78058 hairy and enhancer of split 1, (Drosophila) [Homo sapiens] with 1e-15 by a BLASTP search against NCBI Homo sapiens nr database. The predicted protein does not have either a Hairy_orange domain or a WRPW/YRPW motif. This annotation is based on NJ, ML, and BI. |
| mRNA evidence |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_11631.1_24932.t1 | 1 | 1 | HLH | 32 | 86 | 4.8e-10 | 38.9 | 1.9e-13 | 9.3e-10 | 38.0 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)| Libraries | EST count |
|---|---|
| >Embryonic/Larval stages | |
| mix | 1 |
| 8-16cell | 1 |
| >Adult tissues | |
Transcript
| Transcript ID | pfu_aug1.0_11631.1_24932.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_11631.1_24932.t1 atggcagagattccaagagaaagaaagtctttgggagataaattcttccgaagattctcaattagagagaagactaatgg aattccactggtgaaaaagtcaagcaaacccctgacagagaagaggagaagagacagaattaacaaatgtctggtccaat taaagaacatcatattcagagctagaggaaaagaggagaagaagtttgctcgtctggagaaggccgacattctagagatg accataagtcatttgatggagatccatggtcaagcaacagatgcaaatttgactggggcagatgtaatgatgcagtacag ccctgagagcattcctagtatacatggctgtatgaggagggtggaggcaatgagggacctgaaccctgcccaggaaatat ccagggaggaggagcctagtatctaccccaccccaggggacgtcctggccacgcccaggtactactgtgggaacagtcag aatcagacaatacaggatgttaactttggtcgtgaggacatgatagaggatgatggtataatgtgtgggtccgcctccag ggtatttatgatgtgtggtagccaaaatggtgcctcaccgatagaaggaaatagtattggtgatttatatacacagagga agcaagacaaagtgtcactgataggaaattatcacaactatactccttcatacggcctccatgacaacagttgctatagt aaccatgccctagatgtcaggacctccaaaggacccaagttgacctctacccctcacagcagacctgtcagaagttctac cccaatcatgggcgtcagtgcttattgtatgaaagtaactcctccagatagtgactacctataccgaggtcaaggtcagc ctaaaacatccacaccactccgatccagtgaccttttaaagcaacatgaaatgatgatggaacagaggtacaaagacagc agacagtatggaacaagctttacatctccagaagacttactgtcttgcaagggtcaaggtcaacaagaacaaagtgctac caaggttatgaactttgacatttcccctgatcttcgtaccaggcttttctataactcttcatcatcatcagaggacagcc atgatatacagagttcttctaacaaaagttccaatggtgaatctgggtcaaggtcagctgcttctacgaaggatttgtgg caaccttggaattaa |
|
Protein
| Protein ID | pfu_aug1.0_11631.1_24932.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_11631.1_24932.t1 MAEIPRERKSLGDKFFRRFSIREKTNGIPLVKKSSKPLTEKRRRDRINKCLVQLKNIIFRARGKEEKKFARLEKADILEM TISHLMEIHGQATDANLTGADVMMQYSPESIPSIHGCMRRVEAMRDLNPAQEISREEEPSIYPTPGDVLATPRYYCGNSQ NQTIQDVNFGREDMIEDDGIMCGSASRVFMMCGSQNGASPIEGNSIGDLYTQRKQDKVSLIGNYHNYTPSYGLHDNSCYS NHALDVRTSKGPKLTSTPHSRPVRSSTPIMGVSAYCMKVTPPDSDYLYRGQGQPKTSTPLRSSDLLKQHEMMMEQRYKDS RQYGTSFTSPEDLLSCKGQGQQEQSATKVMNFDISPDLRTRLFYNSSSSSEDSHDIQSSSNKSSNGESGSRSAASTKDLW QPWN |
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