Genome browser

OIST Marine Genomics Unit since 2008

Gene
Gene Model IDpfu_aug1.0_11679.1_39207
Locus scaffold11679.1 : 1 ... 6717 : +
To GenomeBrowser scaffold11679.1:1..6717
Genes list of scaffold scaffold11679.1
Synonym pfu_aug2.0_1008.1_27979

Manual annotation
Hmmer Search for Pfam
query Total ID Target From To Eval Score cEval iEval Score
pfu_aug1.0_11679.1_39207.t1 1 1 Death 30 92 5.2e-11 42.1 1.5e-14 7.5e-11 41.6

Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)

Libraries EST count
>Embryonic/Larval stages
mix 1
>Adult tissues

Transcript
Transcript IDpfu_aug1.0_11679.1_39207.t1
Definition-
>pfu_aug1.0_11679.1_39207.t1
ctgacggaattgatcatacaatactcgtttcaaaagtgtacccagaattcctggatgctgttgcagacaagttgtcgtat
aggtatcttcatctaggattagaactcgggttatcattggaagaaatggagcgttttaagatggagaacaaaagaatcgt
ggaaatttctagagcaatgttgacaaagtggtatgacgaccacacagaggacgcaactgttctcaaccttgccagggcct
tctatcgctgtggagtgaaaaacctggtacaaattgtctcagagtttaagctggaggcggtgatgagaagtgatgatacc
tgcaagttggaatctgtaaagagaagcagatgcagaacatcttga

Protein
Protein IDpfu_aug1.0_11679.1_39207.t1
Definition-
>pfu_aug1.0_11679.1_39207.t1
DGIDHTILVSKVYPEFLDAVADKLSYRYLHLGLELGLSLEEMERFKMENKRIVEISRAMLTKWYDDHTEDATVLNLARAF
YRCGVKNLVQIVSEFKLEAVMRSDDTCKLESVKRSRCRTS

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