Gene
| Gene Model ID | pfu_aug1.0_117214.1_35381 |
|---|---|
| Locus | scaffold117214.1 : 5 ... 1098 : + |
| To GenomeBrowser | scaffold117214.1:5..1098 |
| Genes list of scaffold | scaffold117214.1 |
| Synonym | pfu_aug2.0_49.1_30084 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_117214.1_35381.t1 | 1 | 1 | NAP | 7 | 99 | 3.0e-25 | 88.7 | 2.6e-29 | 3.9e-25 | 88.3 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_117214.1_35381.t1 | gi|45360735|ref|NP_989041.1| | protein SET [Xenopus (Silurana) tropicalis] | 6.0e-38 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)| Libraries | EST count |
|---|---|
| >Embryonic/Larval stages | |
| mix | 2 |
| 8-16cell | 1 |
| egg-Dshape | 1 |
| trochophore | 1 |
| >Adult tissues | |
| Dshape | 1 |
| adductorMuscle | 1 |
| maleGonad | 1 |
| mantle | 1 |
Transcript
| Transcript ID | pfu_aug1.0_117214.1_35381.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_117214.1_35381.t1 atgttggaaagggagtattttgatggtaatcagtactttgaaaatgatgttatatcaaaagaatttcatctgaacgacac aggggaaccctcatccaaatctacgccaatcaaatggaaagcaggaaaagatttaacaaagaaatcaagtacaccgagta aaggtaatcgtaagaggaatttagaagaacaagaatcatttttctgttggtttacggatcacggtgacgcaggagcagat gaattaggagaagtcattaaagacgacatctggccaaatccattacaatattacctggtaagaggagatcatacattgat tggaggaccgatcctttaa |
|
Protein
| Protein ID | pfu_aug1.0_117214.1_35381.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_117214.1_35381.t1 MLEREYFDGNQYFENDVISKEFHLNDTGEPSSKSTPIKWKAGKDLTKKSSTPSKGNRKRNLEEQESFFCWFTDHGDAGAD ELGEVIKDDIWPNPLQYYLVRGDHTLIGGPIL |
|