Gene
| Gene Model ID | pfu_aug1.0_11723.1_03125 |
|---|---|
| Locus | scaffold11723.1 : 160 ... 15440 : - |
| To GenomeBrowser | scaffold11723.1:160..15440 |
| Genes list of scaffold | scaffold11723.1 |
| Synonym | pfu_aug2.0_2568.1_28864 |
Manual annotation
| Study field | Reproduction |
|---|---|
| Gene name | C1q domain containing protein |
| Description | Best hit to MgC1q83. 80 bits, 1e-14 |
| mRNA evidence |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_11723.1_03125.t1 | 1 | 1 | C1q | 39 | 134 | 5.7e-17 | 61.9 | 1.6e-20 | 1.2e-16 | 60.9 |
| pfu_aug1.0_11723.1_03125.t1 | 1 | 1 | G8 | 135 | 226 | 2.8e-16 | 59.4 | 7.4e-20 | 5.5e-16 | 58.4 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_11723.1_03125.t1 | gi|66807089|ref|XP_637267.1| | hypothetical protein DDB_G0287365 [Dictyostelium discoideum AX4] | 4.0e-19 |
Transcript
| Transcript ID | pfu_aug1.0_11723.1_03125.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_11723.1_03125.t1 gacttcttcatcccgttaattctggaaatcttggagttgacgatctctatcaaatgattcagcaacagaacaaaactatt caacaacttctggagagagacactaaaacagtggggtttttcgcacgcctgacgcaaagcacgccgcatcttggagtagg acaaactatcaagtttgacacagtcatcaccaacgaggggaatgcctacgacccaaagcaatcccgattcatcgcaccta tcacaggactttaccagctatcagcgtctgtaatgtcacctccaaatgcgtacgtacactgtgcgatcgtaaagaacggc gctgacgtatctccgctgtacggagcaacgacagattacgattccgacacacaaactattgtgttagatctgcaggcagg cgacatgtttccagaggaaaatgacaacgtcactatatcttcaccaatcctcgtggacgatgatatcccggagttattca gtattactatagacgatggcgggaaactggtgttcagtcgtcatagagaccacgccctcagtgttcattacatactgatc aatgacggaggagagatgcatatcggttctgaagactgcaagtttgagaaatatgctaccataagtttgttaggcgaaaa tgtccaaagagaggatttgcagttaataaacagtggtaaagaagcatttgcagaggtgacattaacactacctgactcgg atacaaagtttgttgttgaatcattgtatagaaagggcgggaggaaatatgctgacttcatggctttagacttacaagaa tatcagcctgtcatcaatgtagttgacgatgtctcatcgtggataccaggtgaccagatctttataacatcaactgacta tgattggaaacaagtagaggaattcaccattctgagttgccctgactgcgcaccaaatcagattaaacttaatgctttac acataatacgatacgtatacttgcgattgcgttttatatgctgtccatcgtttgttaaaatcttcgggtttggtaaacgt aatggccagtgcaaaatcatcttcttgatgatgtttgaagtgtaa |
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Protein
| Protein ID | pfu_aug1.0_11723.1_03125.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_11723.1_03125.t1 LLHPVNSGNLGVDDLYQMIQQQNKTIQQLLERDTKTVGFFARLTQSTPHLGVGQTIKFDTVITNEGNAYDPKQSRFIAPI TGLYQLSASVMSPPNAYVHCAIVKNGADVSPLYGATTDYDSDTQTIVLDLQAGDMFPEENDNVTISSPILVDDDIPELFS ITIDDGGKLVFSRHRDHALSVHYILINDGGEMHIGSEDCKFEKYATISLLGENVQREDLQLINSGKEAFAEVTLTLPDSD TKFVVESLYRKGGRKYADFMALDLQEYQPVINVVDDVSSWIPGDQIFITSTDYDWKQVEEFTILSCPDCAPNQIKLNALH IIRYVYLRLRFICCPSFVKIFGFGKRNGQCKIIFLMMFEV |
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