Gene
| Gene Model ID | pfu_aug1.0_1177.1_65864 |
|---|---|
| Locus | scaffold1177.1 : 26849 ... 43385 : - |
| To GenomeBrowser | scaffold1177.1:26849..43385 |
| Genes list of scaffold | scaffold1177.1 |
| Synonym | NA |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_1177.1_65864.t1 | 1 | 1 | eIF3g | 26 | 149 | 1.19951e-42 | 144.7 | 1.4013e-45 | 1.80067e-42 | 144.2 |
| pfu_aug1.0_1177.1_65864.t1 | 1 | 1 | RRM_1 | 215 | 277 | 2.6e-20 | 71.7 | 2.4e-23 | 5.1e-20 | 70.8 |
| pfu_aug1.0_1177.1_65864.t1 | 1 | 1 | RRM_6 | 215 | 271 | 3.1e-15 | 55.8 | 3.0e-18 | 6.3e-15 | 54.9 |
| pfu_aug1.0_1177.1_65864.t1 | 1 | 1 | RRM_5 | 229 | 289 | 1.7e-08 | 34.1 | 1.4e-11 | 3.0e-08 | 33.3 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_1177.1_65864.t1 | gi|47220039|emb|CAG12187.1| | unnamed protein product [Tetraodon nigroviridis] | 0.0 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)| Libraries | EST count |
|---|---|
| >Embryonic/Larval stages | |
| mix | 1 |
| egg-4cell | 1 |
| 8-16cell | 1 |
| egg-Dshape | 1 |
| trochophore | 1 |
| >Adult tissues | |
| Dshape | 1 |
| adductorMuscle | 1 |
| maleGonad | 1 |
| mantle | 1 |
| mantleEdge | 1 |
| mantlePallium | 1 |
| pearlSac | 1 |
Transcript
| Transcript ID | pfu_aug1.0_1177.1_65864.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_1177.1_65864.t1 atgccgtcgattgaaacagagtctgctcccatcagctgggctgagcaagtagaacaggtggaagatggaggtttaccccc ttcatcagagcattatgacgaggctaaaggcatcaagatcatgacagagtataagtacaatgaagaaggaaagttggtca aggttgtaaagacgtacaaagtagagaggatgagagtggccaaatcaatagccaaaagaaagacctggcgtaagtttggg gctgccgagcgagatcccccgggcccaaatcccgccaataccatcgtgcaagtggaggaaatcaacatgcagtttattca taaccaggatgaacaagtagagcaggaggaagatccattggccaagatcaagagtcagaagttggtgtcgtgtcgtatat gtaagggagatcattggactacaaaatgtccgtacaaagacaccctcggacccctacaggagaacctccaggacaacaaa cctgctacgcctgacgctgctcctgctgcagggccagctcaacctgcccctgtgggtcctgccaagacaccaggaggaaa atatgtaccgccaagtcttagagacggggctgctaaaggaaggggtgaaaccatgagctctaagagagatgaatcggcaa caatccgagtgaccaatctctctgaggacacacgggaatcagatctacaagaattgttcagaccgttcggtccaatccag aggatatacttggcaaaagataaaaatactggccaatcaaagggatttgccttcatcaatttccatcgtagagaggacgc tgcacgggccattgctggtgtatcaggatttggatatgaccatcttatccttaatgtggaatgggcaaaaccatctggta ccaactaa |
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Protein
| Protein ID | pfu_aug1.0_1177.1_65864.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_1177.1_65864.t1 MPSIETESAPISWAEQVEQVEDGGLPPSSEHYDEAKGIKIMTEYKYNEEGKLVKVVKTYKVERMRVAKSIAKRKTWRKFG AAERDPPGPNPANTIVQVEEINMQFIHNQDEQVEQEEDPLAKIKSQKLVSCRICKGDHWTTKCPYKDTLGPLQENLQDNK PATPDAAPAAGPAQPAPVGPAKTPGGKYVPPSLRDGAAKGRGETMSSKRDESATIRVTNLSEDTRESDLQELFRPFGPIQ RIYLAKDKNTGQSKGFAFINFHRREDAARAIAGVSGFGYDHLILNVEWAKPSGTN |
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