Gene
| Gene Model ID | pfu_aug1.0_11790.1_39228 |
|---|---|
| Locus | scaffold11790.1 : 1 ... 16536 : + |
| To GenomeBrowser | scaffold11790.1:1..16536 |
| Genes list of scaffold | scaffold11790.1 |
| Synonym | pfu_aug2.0_401.1_04108 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_11790.1_39228.t1 | 2 | 1 | WW | 11 | 36 | 3.3e-14 | 52.4 | 5.9e-10 | 2.2e-06 | 27.4 |
| pfu_aug1.0_11790.1_39228.t1 | 2 | 2 | WW | 119 | 145 | 3.3e-14 | 52.4 | 1.2e-10 | 4.4e-07 | 29.6 |
| pfu_aug1.0_11790.1_39228.t1 | 2 | 1 | FF | 227 | 273 | 5.7e-24 | 83.8 | 9.8e-15 | 3.6e-11 | 42.8 |
| pfu_aug1.0_11790.1_39228.t1 | 2 | 1 | RbsD_FucU | 263 | 299 | 1.7e-17 | 64.0 | 0.79 | 2900.0 | -1.6 |
| pfu_aug1.0_11790.1_39228.t1 | 2 | 2 | FF | 291 | 340 | 5.7e-24 | 83.8 | 1.7e-15 | 6.3e-12 | 45.2 |
| pfu_aug1.0_11790.1_39228.t1 | 2 | 2 | RbsD_FucU | 365 | 432 | 1.7e-17 | 64.0 | 4.7e-21 | 1.7e-17 | 64.0 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_11790.1_39228.t1 | gi|189234206|ref|XP_970568.2| | PREDICTED: transcription elongation regulator 1 isoform X1 [Tribolium castaneum] | 0.0 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)| Libraries | EST count |
|---|---|
| >Embryonic/Larval stages | |
| mix | 2 |
| egg-4cell | 1 |
| >Adult tissues | |
Transcript
| Transcript ID | pfu_aug1.0_11790.1_39228.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_11790.1_39228.t1 ctacctccaaagccccaggaggtgatggaatggtcagaacacaagagtgctgacggaagatcgtacttctataactctgt caaaatggaatcgacctgggataaacctcaagttcttgttgactgggaagccaaagtagcggccctatctcagccccagg tacagcccagccctacccaggctgaggtgacgcagatgaacggacagtcaaccccagaggatgtttccatggatacatca gagaaggaaccagaagaagaggtgaaaaaagaagagccagaacaaaagcaggaggaagagaaatctcaggcagataaatc cagacctgtatctagtacacctgtacccggaacaccatggtgtgtggtatggactggagatggacgtgtgtttttcttca atccaagtcagcgagtgtcactgtgggaaaagccggaggagctgattggtcgaaatgacgtggacaagatgctacagagt ccccctgacggtaacaagaaggagaaagaggcagaggagcaggaggagccctcagcaaagaaagccaagatggagacagc tgtagattcggatgatggtcaaggtgagaagaagactatagatgtaggtaaggaagccgccatagaggcggaggtacaag cagcgcggcaaagagccgttgttccactggagatcaggatgaagcagttcagagatatgttagcagagaaagaggtgtcg gcgttctcaacatgggagaaggagctacataagattgtgtttgaccagcggtatctactactgacgtccaaggagaggaa gcaggtgtttgagcagtacgtgaaggagagagcggaggaggaacggagagaaaaacatcgcaagctcagggagaagaagg actctttccggcagttactggaagaggcaaaactgcacggaaagtcgtccttcagcgaatttgcatccaaatatggaaag gatgaaaggtttaaaggtatagacaagatgagggagagagaagccattttcagtgacttctgctcggatttacgtcgcaa ggaaaaagaggagaaatccaatcagaaagaaaaagttgcactgatggacccagtgccaagtgacaaggcagcaggcatag aaattccagtatggaaacaatatcgacagctcgttgataagcatgagggtgaaaagacaaaaatcgagtatgtagaaaga tttgccttctatgacagagcaaagaaagcatttgctgtagttcacacaggggaacttgcgaaatatggtaatataatcct gaagaaaggagttgcagtgtga |
|
Protein
| Protein ID | pfu_aug1.0_11790.1_39228.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_11790.1_39228.t1 LPPKPQEVMEWSEHKSADGRSYFYNSVKMESTWDKPQVLVDWEAKVAALSQPQVQPSPTQAEVTQMNGQSTPEDVSMDTS EKEPEEEVKKEEPEQKQEEEKSQADKSRPVSSTPVPGTPWCVVWTGDGRVFFFNPSQRVSLWEKPEELIGRNDVDKMLQS PPDGNKKEKEAEEQEEPSAKKAKMETAVDSDDGQGEKKTIDVGKEAAIEAEVQAARQRAVVPLEIRMKQFRDMLAEKEVS AFSTWEKELHKIVFDQRYLLLTSKERKQVFEQYVKERAEEERREKHRKLREKKDSFRQLLEEAKLHGKSSFSEFASKYGK DERFKGIDKMREREAIFSDFCSDLRRKEKEEKSNQKEKVALMDPVPSDKAAGIEIPVWKQYRQLVDKHEGEKTKIEYVER FAFYDRAKKAFAVVHTGELAKYGNIILKKGVAV |
|