Gene
| Gene Model ID | pfu_aug1.0_11844.1_10376 |
|---|---|
| Locus | scaffold11844.1 : 1 ... 12202 : + |
| To GenomeBrowser | scaffold11844.1:1..12202 |
| Genes list of scaffold | scaffold11844.1 |
| Synonym | pfu_aug2.0_64.1_13525 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_11844.1_10376.t1 | 1 | 1 | WD40 | 220 | 258 | 3.1e-06 | 26.8 | 5.5e-10 | 8.2e-06 | 25.5 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_11844.1_10376.t1 | gi|260789536|ref|XP_002589802.1| | hypothetical protein BRAFLDRAFT_125902 [Branchiostoma floridae] | 3.9937e-43 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)| Libraries | EST count |
|---|---|
| >Embryonic/Larval stages | |
| mix | 1 |
| >Adult tissues | |
Transcript
| Transcript ID | pfu_aug1.0_11844.1_10376.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_11844.1_10376.t1 gtagggccttcaaatccctttaaaacccagcagatgttatcgacaagaaatactctgacgggttacgctgaggctgctca cataagtagctttgagtttgaaaatcagagacgcacgtttcatagttatgcacttcaagattacaacagtgataaaagtg attctgaagatggaaacgacgataattcagaagatttaactgcacacttaaagccgctttcaaattccagggataaaata agtacaattgcactcaattcagctccaacagtcataactaaggtagggccttcaaatccctataaaacccagcagatgtt atcaacaagaaatactctgactggttacgctgaggctgctcacataagtagctttgagtttgaaaatcagagacgcacat ttcatagttatggatatgccatagatccgtcagtagacagtataactacatcccagccacttattgttggtgatagggag aaagaagaggagaataaaggtaaatcagtatttgaagctataacaaagagaccagaagataagaggaaaagacagaggaa tgacaatcctggtgacatcgagggttatctgggaccgtgggggaaatttgtggatgaaaaaacagtcatgaaaccaaatg agtgggacataaggtcaggagagattgtacaggaatatgacagacatttaggtgccgttaatacaatcacgtttgtagat cagaacaggagatttgtttctacgtctgacgataaaagtttacgtgtatgggaatgggatatacctgtagattttaaata tatagcagatccatctatgcactccatgccggctgttacactgtcacataacggttgcaggttacgcatgtggagtggac ttctcaccggacatgaggtttgtgaatactacatgtatatacttctttatcagtcatgttcattacatgatgcataa |
|
Protein
| Protein ID | pfu_aug1.0_11844.1_10376.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_11844.1_10376.t1 VGPSNPFKTQQMLSTRNTLTGYAEAAHISSFEFENQRRTFHSYALQDYNSDKSDSEDGNDDNSEDLTAHLKPLSNSRDKI STIALNSAPTVITKVGPSNPYKTQQMLSTRNTLTGYAEAAHISSFEFENQRRTFHSYGYAIDPSVDSITTSQPLIVGDRE KEEENKGKSVFEAITKRPEDKRKRQRNDNPGDIEGYLGPWGKFVDEKTVMKPNEWDIRSGEIVQEYDRHLGAVNTITFVD QNRRFVSTSDDKSLRVWEWDIPVDFKYIADPSMHSMPAVTLSHNGCRLRMWSGLLTGHEVCEYYMYILLYQSCSLHDA |
|