Gene
Gene Model ID | pfu_aug1.0_11851.1_32127 |
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Locus | scaffold11851.1 : 175 ... 12725 : - |
To GenomeBrowser | scaffold11851.1:175..12725 |
Genes list of scaffold | scaffold11851.1 |
Synonym | pfu_aug2.0_315.1_17279 |
Manual annotation
Study field | Environmental Response |
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Gene name | gamma-aminobutyric acid type B receptor subunit 2 |
Description | Homology to XP_002708203.1| PREDICTED: gamma-aminobutyric acid (GABA) B receptor, 2 [Oryctolagus cuniculus |
mRNA evidence |
Hmmer Search for Pfam
query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
---|---|---|---|---|---|---|---|---|---|---|
pfu_aug1.0_11851.1_32127.t1 | 1 | 1 | ANF_receptor | 21 | 176 | 2.1e-11 | 43.2 | 7.4e-15 | 3.7e-11 | 42.4 |
pfu_aug1.0_11851.1_32127.t1 | 1 | 1 | 7tm_3 | 248 | 502 | 8.50028e-42 | 143.1 | 2.8026e-45 | 1.29998e-41 | 142.5 |
Blast Hit to nr / sp
query | Subject ID | Subject Name | evalue |
---|---|---|---|
pfu_aug1.0_11851.1_32127.t1 | gi|291382920|ref|XP_002708203.1| | 0.0 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)Libraries | EST count |
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>Embryonic/Larval stages | |
mix | 1 |
>Adult tissues |
Transcript
Transcript ID | pfu_aug1.0_11851.1_32127.t1 |
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Definition | - |
>pfu_aug1.0_11851.1_32127.t1 atgaattttggcgacttatgtaaaacactttggctggaagcatcactgacgaggattcgatatctgaaacacgcttacca gcttggcatgacgggaccaacctacacgtggatgttacccggatggtacgaggataattggtgggaaaccaactcaactt cctgtcacgtgacagagttaagaaaagccgtgcagtatcatatagcaacagaagtcgtgtcgttggctgataatgactca gcgaccgatgttgttaagaatcctaaagaattcacagaggagtataacatcaggatatcatccgggacttacggtggtac aagttatgctacatccgggtacgacagcgtgtgggtgatcgcttatgcgctcaataaaacgaatgaggttctgacgcaac aaggatctagcctatcagctttcacatattccagtgatgatataaggggccttattttcaattttgtgaacgagacaaat ataactggagtttctggactgatacagtacaacagtaacggcatgagactgggaacaacaagggtcaagcaatacaaagg taatggatatgaaaacattttaaagtatgacacaaataacggtcagttcacatctgaaggagcaacattcgaatggaaga caactaatggtggtccaccctctgacggcccagtcttgacagaggagcttcgaggtgtgagcaaacctttgttttttatt gtcaatgttctagccagtgctgggattgtgttcaacctctttttgttgacatttaatgtcatctaccggaacagaagaat attgaaaatgtcgagtccgaacattaattatttaatttgttgcgggacactccttatctacatcagcactctgctatttg ggtttgaaacagaaggagatcttagcgaattgaaaagtgaaaaggtcgtctcaagcatctgcatggccacgtgttggatg ttaactttaggcttcagcagtagttttggcgccattattgccaaagcttggagaataaggcgactgatgtccaccaccaa gatgaaaaaacagaatatcaaagattggcacctgtttatagccatcggtatcctcgcattgattgatctaatgatactaa ttccgtggtcagccgtagaccctgtcaaaattgaagtttttcctatggacagagagagagtaggagaggacgaattcgtg aagccctatgattcgagatgtgactctgaaagcgatgtatggttgatagttatctatgtttacaaaggactcttgttatt atatggtgctctcgtagcatgggagcagagaaacatcaaaatgacattattgaacgagggtaaacccatcgcgctgacaa tctataccgttacggttctgtgcatcatagcagttccggtatcatttgtacttgagacaaagactgattttgtgtatggt atttgctctttttgcataatttttggtacaacgatcatgctcagcttctgcttcataccaaagagcactttctacataga aatggcctcagacagtgcagttcatgtttttcatatgttttcattttcgtgcatgatcatcgacggcgggtgcggctag |
Protein
Protein ID | pfu_aug1.0_11851.1_32127.t1 |
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Definition | - |
>pfu_aug1.0_11851.1_32127.t1 MNFGDLCKTLWLEASLTRIRYLKHAYQLGMTGPTYTWMLPGWYEDNWWETNSTSCHVTELRKAVQYHIATEVVSLADNDS ATDVVKNPKEFTEEYNIRISSGTYGGTSYATSGYDSVWVIAYALNKTNEVLTQQGSSLSAFTYSSDDIRGLIFNFVNETN ITGVSGLIQYNSNGMRLGTTRVKQYKGNGYENILKYDTNNGQFTSEGATFEWKTTNGGPPSDGPVLTEELRGVSKPLFFI VNVLASAGIVFNLFLLTFNVIYRNRRILKMSSPNINYLICCGTLLIYISTLLFGFETEGDLSELKSEKVVSSICMATCWM LTLGFSSSFGAIIAKAWRIRRLMSTTKMKKQNIKDWHLFIAIGILALIDLMILIPWSAVDPVKIEVFPMDRERVGEDEFV KPYDSRCDSESDVWLIVIYVYKGLLLLYGALVAWEQRNIKMTLLNEGKPIALTIYTVTVLCIIAVPVSFVLETKTDFVYG ICSFCIIFGTTIMLSFCFIPKSTFYIEMASDSAVHVFHMFSFSCMIIDGGCG |