Gene
| Gene Model ID | pfu_aug1.0_11851.1_32127 |
|---|---|
| Locus | scaffold11851.1 : 175 ... 12725 : - |
| To GenomeBrowser | scaffold11851.1:175..12725 |
| Genes list of scaffold | scaffold11851.1 |
| Synonym | pfu_aug2.0_315.1_17279 |
Manual annotation
| Study field | Environmental Response |
|---|---|
| Gene name | gamma-aminobutyric acid type B receptor subunit 2 |
| Description | Homology to XP_002708203.1| PREDICTED: gamma-aminobutyric acid (GABA) B receptor, 2 [Oryctolagus cuniculus |
| mRNA evidence |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_11851.1_32127.t1 | 1 | 1 | ANF_receptor | 21 | 176 | 2.1e-11 | 43.2 | 7.4e-15 | 3.7e-11 | 42.4 |
| pfu_aug1.0_11851.1_32127.t1 | 1 | 1 | 7tm_3 | 248 | 502 | 8.50028e-42 | 143.1 | 2.8026e-45 | 1.29998e-41 | 142.5 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_11851.1_32127.t1 | gi|291382920|ref|XP_002708203.1| | 0.0 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)| Libraries | EST count |
|---|---|
| >Embryonic/Larval stages | |
| mix | 1 |
| >Adult tissues | |
Transcript
| Transcript ID | pfu_aug1.0_11851.1_32127.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_11851.1_32127.t1 atgaattttggcgacttatgtaaaacactttggctggaagcatcactgacgaggattcgatatctgaaacacgcttacca gcttggcatgacgggaccaacctacacgtggatgttacccggatggtacgaggataattggtgggaaaccaactcaactt cctgtcacgtgacagagttaagaaaagccgtgcagtatcatatagcaacagaagtcgtgtcgttggctgataatgactca gcgaccgatgttgttaagaatcctaaagaattcacagaggagtataacatcaggatatcatccgggacttacggtggtac aagttatgctacatccgggtacgacagcgtgtgggtgatcgcttatgcgctcaataaaacgaatgaggttctgacgcaac aaggatctagcctatcagctttcacatattccagtgatgatataaggggccttattttcaattttgtgaacgagacaaat ataactggagtttctggactgatacagtacaacagtaacggcatgagactgggaacaacaagggtcaagcaatacaaagg taatggatatgaaaacattttaaagtatgacacaaataacggtcagttcacatctgaaggagcaacattcgaatggaaga caactaatggtggtccaccctctgacggcccagtcttgacagaggagcttcgaggtgtgagcaaacctttgttttttatt gtcaatgttctagccagtgctgggattgtgttcaacctctttttgttgacatttaatgtcatctaccggaacagaagaat attgaaaatgtcgagtccgaacattaattatttaatttgttgcgggacactccttatctacatcagcactctgctatttg ggtttgaaacagaaggagatcttagcgaattgaaaagtgaaaaggtcgtctcaagcatctgcatggccacgtgttggatg ttaactttaggcttcagcagtagttttggcgccattattgccaaagcttggagaataaggcgactgatgtccaccaccaa gatgaaaaaacagaatatcaaagattggcacctgtttatagccatcggtatcctcgcattgattgatctaatgatactaa ttccgtggtcagccgtagaccctgtcaaaattgaagtttttcctatggacagagagagagtaggagaggacgaattcgtg aagccctatgattcgagatgtgactctgaaagcgatgtatggttgatagttatctatgtttacaaaggactcttgttatt atatggtgctctcgtagcatgggagcagagaaacatcaaaatgacattattgaacgagggtaaacccatcgcgctgacaa tctataccgttacggttctgtgcatcatagcagttccggtatcatttgtacttgagacaaagactgattttgtgtatggt atttgctctttttgcataatttttggtacaacgatcatgctcagcttctgcttcataccaaagagcactttctacataga aatggcctcagacagtgcagttcatgtttttcatatgttttcattttcgtgcatgatcatcgacggcgggtgcggctag |
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Protein
| Protein ID | pfu_aug1.0_11851.1_32127.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_11851.1_32127.t1 MNFGDLCKTLWLEASLTRIRYLKHAYQLGMTGPTYTWMLPGWYEDNWWETNSTSCHVTELRKAVQYHIATEVVSLADNDS ATDVVKNPKEFTEEYNIRISSGTYGGTSYATSGYDSVWVIAYALNKTNEVLTQQGSSLSAFTYSSDDIRGLIFNFVNETN ITGVSGLIQYNSNGMRLGTTRVKQYKGNGYENILKYDTNNGQFTSEGATFEWKTTNGGPPSDGPVLTEELRGVSKPLFFI VNVLASAGIVFNLFLLTFNVIYRNRRILKMSSPNINYLICCGTLLIYISTLLFGFETEGDLSELKSEKVVSSICMATCWM LTLGFSSSFGAIIAKAWRIRRLMSTTKMKKQNIKDWHLFIAIGILALIDLMILIPWSAVDPVKIEVFPMDRERVGEDEFV KPYDSRCDSESDVWLIVIYVYKGLLLLYGALVAWEQRNIKMTLLNEGKPIALTIYTVTVLCIIAVPVSFVLETKTDFVYG ICSFCIIFGTTIMLSFCFIPKSTFYIEMASDSAVHVFHMFSFSCMIIDGGCG |
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