Gene
| Gene Model ID | pfu_aug1.0_1187.1_43924 |
|---|---|
| Locus | scaffold1187.1 : 1 ... 17035 : - |
| To GenomeBrowser | scaffold1187.1:1..17035 |
| Genes list of scaffold | scaffold1187.1 |
| Synonym | pfu_aug2.0_471.1_04231 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_1187.1_43924.t1 | 2 | 1 | Neur_chan_LBD | 12 | 108 | 1.3e-31 | 109.4 | 1.7e-19 | 6.2e-16 | 58.2 |
| pfu_aug1.0_1187.1_43924.t1 | 1 | 1 | Neur_chan_memb | 115 | 212 | 6.6e-13 | 49.0 | 2.5e-16 | 9.1e-13 | 48.6 |
| pfu_aug1.0_1187.1_43924.t1 | 2 | 2 | Neur_chan_LBD | 224 | 290 | 1.3e-31 | 109.4 | 4.2e-17 | 1.6e-13 | 50.3 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_1187.1_43924.t1 | gi|344281562|ref|XP_003412547.1| | PREDICTED: LOW QUALITY PROTEIN: neuronal acetylcholine receptor subunit alpha-6 [Loxodonta africana] | 2.0e-27 |
Transcript
| Transcript ID | pfu_aug1.0_1187.1_43924.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_1187.1_43924.t1 atggagcctgtaggcgattcatctttcttcccgagagtcatttttgatggaacggtttggaggtacgtttcctccatatt gaaaacgtcttgccaagttgacttgacgttctttccattcgacaaacaagtctgtaacattgagttactggcctggggtt actcgtttgaggaaatctacctgagaaacgtaacaaacattgtagatttgacatacttccaggacaatgcgcagtggaaa gtagaaagcgctgtcctgaaagaacataccttaaagaatattgaaggcatggttgcagcagtcttaactttgaaaaggag accaacatactatgttgtcaatatcatttgtccaatattcatgctgtgtatattgaatcccttggtgttcctcctgccga cagaaagcggagaacgtatatcttacaccatcaccatattcttgtctcttgccgtgtttatgacattgataagtgacaac atgcctaaatcctcagaaccgatgtcacgcctgtcctacatattactgattaccatggcctacagtacagttctctgtat agcttccatctacataatgcgagtccacttccgtccaaaaagccgtcccattcccagaacaatggagaaagcaatatctg ttctgcggtgtcgatgtctacctatgtattttggttacgtatggcgatatctttcttctattatgaaaacttcatgttct gttgatatgacgtatttcccgttcgacactcaggagtgtcaaatagagctttctccttgggggttctcctcagaagagat attcctgaaaaatgcgtccacaaccgtagacatgacttacttccaggagaacgcacagtggagagtgataatcctcagat ttattcttcaacggggtttagctgttgtgccaaaatcagtcacagcctctcgaatacaagaaaattttcaggtttttgac tttgagctaacagcagaagaaatgagtggcatactttccttgaacaaagaccatcgtttgttgaaagaggaaatgttctg gtttaaacaaatttag |
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Protein
| Protein ID | pfu_aug1.0_1187.1_43924.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_1187.1_43924.t1 MEPVGDSSFFPRVIFDGTVWRYVSSILKTSCQVDLTFFPFDKQVCNIELLAWGYSFEEIYLRNVTNIVDLTYFQDNAQWK VESAVLKEHTLKNIEGMVAAVLTLKRRPTYYVVNIICPIFMLCILNPLVFLLPTESGERISYTITIFLSLAVFMTLISDN MPKSSEPMSRLSYILLITMAYSTVLCIASIYIMRVHFRPKSRPIPRTMEKAISVLRCRCLPMYFGYVWRYLSSIMKTSCS VDMTYFPFDTQECQIELSPWGFSSEEIFLKNASTTVDMTYFQENAQWRVIILRFILQRGLAVVPKSVTASRIQENFQVFD FELTAEEMSGILSLNKDHRLLKEEMFWFKQI |
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