Gene
| Gene Model ID | pfu_aug1.0_1187.1_43926 |
|---|---|
| Locus | scaffold1187.1 : 27616 ... 30101 : + |
| To GenomeBrowser | scaffold1187.1:27616..30101 |
| Genes list of scaffold | scaffold1187.1 |
| Synonym | pfu_aug2.0_471.1_04234 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_1187.1_43926.t1 | 1 | 1 | Neur_chan_LBD | 46 | 243 | 2.49431e-43 | 147.7 | 0.0 | 3.60134e-43 | 147.2 |
| pfu_aug1.0_1187.1_43926.t1 | 2 | 1 | Neur_chan_memb | 251 | 373 | 3.6e-11 | 43.4 | 4.8e-15 | 3.6e-11 | 43.4 |
| pfu_aug1.0_1187.1_43926.t1 | 2 | 2 | Neur_chan_memb | 419 | 449 | 3.6e-11 | 43.4 | 0.14 | 1100.0 | -0.7 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_1187.1_43926.t1 | gi|350594613|ref|XP_003359920.2| | PREDICTED: neuronal acetylcholine receptor subunit beta-3 [Sus scrofa] | 4.00001e-41 |
Transcript
| Transcript ID | pfu_aug1.0_1187.1_43926.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_1187.1_43926.t1 atgatcttgcaggagaaaatcagaaagacagagaagtctatgatgaagattcagatctggggagtgtgctgtttccttat tttgtctcactttgtatctcgtcgggtaaatgctaacaacttcaccgtcgctgaaagtgtacattcatatattttcgaca actatgacaaggatatttccccaatatacagcaatacactcatggtgtatgtttcaatgtacctattctccatcgtcgat ttcgatgaaattgcaggaactattacaataatgggtggactatattatacatggattgataaaaggttaatctgggaacc tagtagatatggaaatctggaggtaatagtcgtaccaagtgaaaaggtttgggtaccagatatatattacttaaacccgg ctgattacatgattccaataggttcaagatacttcaaaaatcgtgtctactctaatggagcggtattaagaaatgttggt tccatcatgaaaacaacatgtgacgttgacataacctatttcccattcgatgaacagacgtgtgaaatcgacttctatac atacggttatgatgcttcagaaatatatctgcaaattactagaggtcaagttgatatgtctgatttccgccctaactctc agtggaaagttcagtctgcaattctcaaacgaaaagagagatcgaaattagacggtgcagtaactgcagttcttgtacta gataggcatccagaatactttactgtgaatattcttattccggtcctgttcctttgtctgctgaatccagtcgtgtttct cctaccagcagagagcggtgaaaggatttcgtatactgttaccatttacctttcattggcagtatttatgacgcttgtca atgataatatgccaaaatcgtccaagcctttgtcaagattgtctatgtttcttatcttaatgatcgcgtccagcacagtc ttatgtattctggccattacaatcacaaagatctacttcagggacgattcattgccggtgccaaactggacgattcaggt tttacatatgatgaagtttaagtggtgtgcaaagtttatggagaagaacaaagtccaatcgtccggaaataacaataatg gtagcacacctaagccccttggtgacgacaacaaatgtttgtcaaagaaagaaatcttacttattcctgaggactttcag gatgtcatatatgaaaacaaggacaagggaaaagatgggattgaccaaagtctggaaaagttttcatggaagcaactttc ccgtgagatggacaaagtcgcctttggttattctgtattctttctaattgttatgttcactttattcatggtagttggat tgcgagcttattga |
|
Protein
| Protein ID | pfu_aug1.0_1187.1_43926.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_1187.1_43926.t1 MILQEKIRKTEKSMMKIQIWGVCCFLILSHFVSRRVNANNFTVAESVHSYIFDNYDKDISPIYSNTLMVYVSMYLFSIVD FDEIAGTITIMGGLYYTWIDKRLIWEPSRYGNLEVIVVPSEKVWVPDIYYLNPADYMIPIGSRYFKNRVYSNGAVLRNVG SIMKTTCDVDITYFPFDEQTCEIDFYTYGYDASEIYLQITRGQVDMSDFRPNSQWKVQSAILKRKERSKLDGAVTAVLVL DRHPEYFTVNILIPVLFLCLLNPVVFLLPAESGERISYTVTIYLSLAVFMTLVNDNMPKSSKPLSRLSMFLILMIASSTV LCILAITITKIYFRDDSLPVPNWTIQVLHMMKFKWCAKFMEKNKVQSSGNNNNGSTPKPLGDDNKCLSKKEILLIPEDFQ DVIYENKDKGKDGIDQSLEKFSWKQLSREMDKVAFGYSVFFLIVMFTLFMVVGLRAY |
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