Gene
| Gene Model ID | pfu_aug1.0_11879.1_10387 |
|---|---|
| Locus | scaffold11879.1 : 13706 ... 25688 : + |
| To GenomeBrowser | scaffold11879.1:13706..25688 |
| Genes list of scaffold | scaffold11879.1 |
| Synonym | pfu_aug2.0_642.1_07752 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_11879.1_10387.t1 | 1 | 1 | TMC | 145 | 255 | 3.2e-38 | 130.5 | 1.49995e-41 | 3.2e-38 | 130.5 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_11879.1_10387.t1 | gi|260808993|ref|XP_002599291.1| | hypothetical protein BRAFLDRAFT_199751 [Branchiostoma floridae] | 0.0 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)| Libraries | EST count |
|---|---|
| >Embryonic/Larval stages | |
| mix | 1 |
| >Adult tissues | |
Transcript
| Transcript ID | pfu_aug1.0_11879.1_10387.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_11879.1_10387.t1 atggaggaaaggaacaacatgtcgtcccagaagaagtgcgggttatatactatcagagtgcttatttttatcctggttct ggcactgcttggtgggtctggagctgccatctacttcgtcacagcttacacgtctgatttcttatccagtggtaagtccc agacagaggataattttgtggttttactagtggagtttttaccgtctctgactatcactgccctcaatgctgtcattcct ataatatttggacttgtaatcaaagctgaagactatacaccggccttcaccatacagtatacacttataaggacggtatt tttgcgtttggcgtccctggcagttttagtggctaccctgtatcagaccatatcatgtacagacaaagatacacagtgta atgtaggtcaaggaagctgtgattcatacaggtgttgggagacatatgttggacagaacttctacaaactggctgttctg aacgctctagtgcacattgccgtcacattggcgtatgaactgccaagaaaattactgacaacaaaatgtagctgtggtat ttgtcaaaagattggacctgctgaatttgacatacctaaaaacgtattggatctggtgtatacacaagcactgtgttgga taggatttttctatgcacctctgcttccaatactgacagtcgctgacctcttcttcctgttttacctcaaatatttgtca gccatgtataataccacgcctccggagcgcccttataaagcttccaagtccaacaatttctttatgatagtgctgatggt caccttcttcttctgctgtgttcctgtgggataccccatggtctcacttgagccttcaaagggatgtggaccattccgta tatacaccaagatgagcgtcattgtagatgcaacaatatcaaacttcccgtccactatacgtaccatactaagcttggtg acgtcagcttctgttattatctgccttgttgttctcttatgtttgataatttactactgtgctgctcgatcatctgctaa atccaaagcagtaaacttgatgaaggaacaacttatcttggaaggaaaagacaagcagttcctgctcaacagaatttatg aattaactggtgaaaaaccaggagcgaagaaagtagccaatggaaacgtaaaaactacagcgtctaccattgatgagact aagaaagggtatcctgatgaaaatgggctgaagactttacatgtaaaagaacaagttcctgacgctgtggtatatgacat ccccgacaatgaattcaatgattcaataaccaccaaagacacagccccactcaccaaggaaacatcgtttgtagattggg gagacggcgatacggaggaaaacaacaactcaagggcaaggtcaatagctaccacagggaaagtcggcattgaggatttt taa |
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Protein
| Protein ID | pfu_aug1.0_11879.1_10387.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_11879.1_10387.t1 MEERNNMSSQKKCGLYTIRVLIFILVLALLGGSGAAIYFVTAYTSDFLSSGKSQTEDNFVVLLVEFLPSLTITALNAVIP IIFGLVIKAEDYTPAFTIQYTLIRTVFLRLASLAVLVATLYQTISCTDKDTQCNVGQGSCDSYRCWETYVGQNFYKLAVL NALVHIAVTLAYELPRKLLTTKCSCGICQKIGPAEFDIPKNVLDLVYTQALCWIGFFYAPLLPILTVADLFFLFYLKYLS AMYNTTPPERPYKASKSNNFFMIVLMVTFFFCCVPVGYPMVSLEPSKGCGPFRIYTKMSVIVDATISNFPSTIRTILSLV TSASVIICLVVLLCLIIYYCAARSSAKSKAVNLMKEQLILEGKDKQFLLNRIYELTGEKPGAKKVANGNVKTTASTIDET KKGYPDENGLKTLHVKEQVPDAVVYDIPDNEFNDSITTKDTAPLTKETSFVDWGDGDTEENNNSRARSIATTGKVGIEDF |
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