Gene
| Gene Model ID | pfu_aug1.0_11890.1_39250 |
|---|---|
| Locus | scaffold11890.1 : 26368 ... 31075 : - |
| To GenomeBrowser | scaffold11890.1:26368..31075 |
| Genes list of scaffold | scaffold11890.1 |
| Synonym | pfu_aug2.0_556.1_20899 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_11890.1_39250.t1 | 1 | 1 | Transmemb_17 | 1 | 46 | 6.1e-07 | 29.7 | 8.5e-11 | 6.3e-07 | 29.7 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_11890.1_39250.t1 | gi|260821097|ref|XP_002605870.1| | hypothetical protein BRAFLDRAFT_90803 [Branchiostoma floridae] | 1.0e-23 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)| Libraries | EST count |
|---|---|
| >Embryonic/Larval stages | |
| mix | 4 |
| egg-4cell | 4 |
| 8-16cell | 1 |
| egg-Dshape | 1 |
| >Adult tissues | |
Transcript
| Transcript ID | pfu_aug1.0_11890.1_39250.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_11890.1_39250.t1 gtcccagagttggcgggatcctggctgttgacgttgctcatccagttccctctcatcctcctcctagtgtttaatgacga ggctttattactaccgctagaacgtgctgttcacatcatagaagccttgtttgttctgtttgaagtgatttgtgggtatt ttgccgtaaggacgatggtgaattaccaagtgacaaagtttcatttacgtcaatttacagacttggaacaaatgccaaca gaggagtactggcatgacaaatatgaatcttatacatag |
|
Protein
| Protein ID | pfu_aug1.0_11890.1_39250.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_11890.1_39250.t1 VPELAGSWLLTLLIQFPLILLLVFNDEALLLPLERAVHIIEALFVLFEVICGYFAVRTMVNYQVTKFHLRQFTDLEQMPT EEYWHDKYESYT |
|