Gene
| Gene Model ID | pfu_aug1.0_11913.1_39258 |
|---|---|
| Locus | scaffold11913.1 : 5446 ... 10145 : - |
| To GenomeBrowser | scaffold11913.1:5446..10145 |
| Genes list of scaffold | scaffold11913.1 |
| Synonym | pfu_aug2.0_94.1_13588 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_11913.1_39258.t1 | 1 | 1 | Hormone_recep | 68 | 230 | 3.0e-16 | 59.1 | 3.0e-20 | 4.4e-16 | 58.6 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_11913.1_39258.t1 | gi|260808486|ref|XP_002599038.1| | hypothetical protein BRAFLDRAFT_245659 [Branchiostoma floridae] | 2.0e-22 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)| Libraries | EST count |
|---|---|
| >Embryonic/Larval stages | |
| mix | 2 |
| >Adult tissues | |
| mantle | 1 |
Transcript
| Transcript ID | pfu_aug1.0_11913.1_39258.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_11913.1_39258.t1 atgagctccagttcttcaatgcttcgcaatttgttgtcccgcggaaaacatgaaaatgatgcacaatttggaaatttcaa agatctcagtgacaatttagactctgaacaaatccctccgatcaggaacgttaacgggaccactagggtgactttggcaa agaaaaatatgtatccggtgggttcccgtgtgtcagactggttagttaaaataattcagttttccaagtcgattccggac tttgcaaatctgtctcataacgacaaggtttctctgatactcaacgcttggacgagaattcttctgctttacatggctga gagtaactttcaatttgctgtgacgccactgagaacggaagtgacgtcaggtgatgacaaagcagtgccgtcacccgacc agcccactatgaaatctgtagatactattcagaactttattcgcaaatgccaggtgatgaatctcgatcagaaagaatat gcattcctgagaatggctgttttatttaatgctggatacagtgggttagaccgcccagagcacgttgaccaactgaattc cttgatacaacagcttctgaaggagcacgtgcagacatcccgtccaaatgacgtcatgcactattctcgtctgctcctat gtctgccggcattgtacgggataaactgcaagatgattgagaacctcttttgcaaacacatcaacggcaacatggatata gaaatgcttctaaaggaaatgctacagaacttataa |
|
Protein
| Protein ID | pfu_aug1.0_11913.1_39258.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_11913.1_39258.t1 MSSSSSMLRNLLSRGKHENDAQFGNFKDLSDNLDSEQIPPIRNVNGTTRVTLAKKNMYPVGSRVSDWLVKIIQFSKSIPD FANLSHNDKVSLILNAWTRILLLYMAESNFQFAVTPLRTEVTSGDDKAVPSPDQPTMKSVDTIQNFIRKCQVMNLDQKEY AFLRMAVLFNAGYSGLDRPEHVDQLNSLIQQLLKEHVQTSRPNDVMHYSRLLLCLPALYGINCKMIENLFCKHINGNMDI EMLLKEMLQNL |
|