Gene
| Gene Model ID | pfu_aug1.0_11916.1_39261 |
|---|---|
| Locus | scaffold11916.1 : 35434 ... 45725 : - |
| To GenomeBrowser | scaffold11916.1:35434..45725 |
| Genes list of scaffold | scaffold11916.1 |
| Synonym | pfu_aug2.0_122.1_06978 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_11916.1_39261.t1 | 2 | 1 | Rad60-SLD | 1 | 71 | 6.00036e-42 | 141.1 | 2.9e-23 | 2.8e-20 | 71.7 |
| pfu_aug1.0_11916.1_39261.t1 | 2 | 1 | Telomere_Sde2 | 1 | 76 | 2.1e-10 | 40.5 | 7.3e-07 | 0.00072 | 19.2 |
| pfu_aug1.0_11916.1_39261.t1 | 2 | 1 | ubiquitin | 6 | 74 | 0.0 | 235.8 | 3.4e-38 | 3.3e-35 | 119.2 |
| pfu_aug1.0_11916.1_39261.t1 | 2 | 1 | TUG-UBL1 | 9 | 52 | 5.4e-06 | 26.2 | 0.00011 | 0.11 | 12.3 |
| pfu_aug1.0_11916.1_39261.t1 | 2 | 1 | Rad60-SLD_2 | 10 | 71 | 9.6e-08 | 31.9 | 2.4e-05 | 0.024 | 14.5 |
| pfu_aug1.0_11916.1_39261.t1 | 2 | 1 | Ubiquitin_2 | 11 | 69 | 9.1e-15 | 54.6 | 1.0e-08 | 1.0e-05 | 25.6 |
| pfu_aug1.0_11916.1_39261.t1 | 2 | 1 | DUF2407 | 13 | 59 | 1.9e-06 | 27.9 | 6.6e-05 | 0.065 | 13.4 |
| pfu_aug1.0_11916.1_39261.t1 | 2 | 2 | Rad60-SLD | 77 | 147 | 6.00036e-42 | 141.1 | 2.9e-23 | 2.8e-20 | 71.7 |
| pfu_aug1.0_11916.1_39261.t1 | 2 | 2 | Telomere_Sde2 | 77 | 152 | 2.1e-10 | 40.5 | 6.1e-07 | 0.0006 | 19.5 |
| pfu_aug1.0_11916.1_39261.t1 | 2 | 2 | ubiquitin | 82 | 150 | 0.0 | 235.8 | 3.4e-38 | 3.3e-35 | 119.2 |
| pfu_aug1.0_11916.1_39261.t1 | 2 | 2 | TUG-UBL1 | 85 | 128 | 5.4e-06 | 26.2 | 0.00011 | 0.11 | 12.3 |
| pfu_aug1.0_11916.1_39261.t1 | 2 | 2 | Rad60-SLD_2 | 86 | 147 | 9.6e-08 | 31.9 | 2.2e-05 | 0.022 | 14.6 |
| pfu_aug1.0_11916.1_39261.t1 | 2 | 2 | Ubiquitin_2 | 87 | 145 | 9.1e-15 | 54.6 | 1.0e-08 | 1.0e-05 | 25.6 |
| pfu_aug1.0_11916.1_39261.t1 | 2 | 2 | DUF2407 | 89 | 134 | 1.9e-06 | 27.9 | 8.7e-05 | 0.087 | 13.0 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_11916.1_39261.t1 | gi|325302604|tpg|DAA34466.1| | TPA_exp: ubiquitin [Amblyomma variegatum] | 0.0 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)| Libraries | EST count |
|---|---|
| >Embryonic/Larval stages | |
| 8-16cell | 1 |
| egg-Dshape | 1 |
| trochophore | 1 |
| >Adult tissues | |
| adductorMuscle | 1 |
| maleGonad | 1 |
| mantle | 2 |
| mantleEdge | 4 |
| mantlePallium | 2 |
Transcript
| Transcript ID | pfu_aug1.0_11916.1_39261.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_11916.1_39261.t1 atgcagatttttgtgaagaccctgacaggcaagaccatcacgttggaagtagaaccctctgacaccattgagaatgtcaa ggccaagatccaggataaggagggaattcccccagaccaacagagattgatctttgctggtaaacagttggaggacggaa gaacactgtcagactataacatccagaaggagtccacactccatcttgtacttcgtctccgaggaggtatgcagattttt gtgaagactctgacaggcaagaccatcaccttggaagtagaaccctctgacaccattgagaatgtcaaggccaagatcca ggataaggagggaattcccccagaccaacagagattgatctttgctggtaaacagttggaggacggaagaacactgtcag actataacatccagaaggagtccacactccatcttgtacttcgtctcagaggaggactgtaa |
|
Protein
| Protein ID | pfu_aug1.0_11916.1_39261.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_11916.1_39261.t1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIF VKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGL |
|