Gene
| Gene Model ID | pfu_aug1.0_11916.1_39262 |
|---|---|
| Locus | scaffold11916.1 : 46583 ... 62445 : - |
| To GenomeBrowser | scaffold11916.1:46583..62445 |
| Genes list of scaffold | scaffold11916.1 |
| Synonym | pfu_aug2.0_122.1_06979 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_11916.1_39262.t1 | 3 | 1 | zf-H2C2_2 | 2 | 26 | 1.6e-12 | 47.0 | 1.1e-06 | 0.0028 | 17.8 |
| pfu_aug1.0_11916.1_39262.t1 | 3 | 1 | zf-C2H2 | 15 | 36 | 1.3e-06 | 28.3 | 0.00069 | 1.7 | 9.1 |
| pfu_aug1.0_11916.1_39262.t1 | 3 | 1 | zf-C2H2_4 | 15 | 35 | 8.9e-06 | 25.6 | 0.0042 | 10.0 | 6.7 |
| pfu_aug1.0_11916.1_39262.t1 | 3 | 2 | zf-H2C2_2 | 33 | 55 | 1.6e-12 | 47.0 | 0.0038 | 9.4 | 6.7 |
| pfu_aug1.0_11916.1_39262.t1 | 3 | 2 | zf-C2H2 | 44 | 66 | 1.3e-06 | 28.3 | 2.3e-08 | 5.6e-05 | 23.2 |
| pfu_aug1.0_11916.1_39262.t1 | 3 | 2 | zf-C2H2_4 | 44 | 66 | 8.9e-06 | 25.6 | 2.7e-06 | 0.0066 | 16.7 |
| pfu_aug1.0_11916.1_39262.t1 | 3 | 3 | zf-H2C2_2 | 59 | 81 | 1.6e-12 | 47.0 | 1.1e-10 | 2.7e-07 | 30.5 |
| pfu_aug1.0_11916.1_39262.t1 | 3 | 3 | zf-C2H2 | 72 | 97 | 1.3e-06 | 28.3 | 0.0073 | 18.0 | 5.9 |
| pfu_aug1.0_11916.1_39262.t1 | 3 | 3 | zf-C2H2_4 | 72 | 97 | 8.9e-06 | 25.6 | 0.00011 | 0.26 | 11.6 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_11916.1_39262.t1 | gi|301628352|ref|XP_002943322.1| | 1.0e-14 |
Transcript
| Transcript ID | pfu_aug1.0_11916.1_39262.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_11916.1_39262.t1 atgttgaaggatcataaacttatccacacagagaaaacaccgtttgtttgtgaaacttgcggcactggattcaagtctcg aacctgtctccacagtcatgtataccataaacataacacaagcaggaaacatgcctgtaatgaatgtgatagaacattta aaactaaaacacagctgacggtacatctacgaactcacactggagagaaacctttcgcttgtccagaatgcaatggatca tacagatcaacaactcgaggcaacatgagactgcacctcactaataaacacaagtttactgttgataaaatcaacaaact aatggcagagattaaaccaacagcagaggttggaatagaaactgttgatggtgtaagtgatttcaaacccttacccttga aaaagtcacaacccaaacctgctgcaaaaaaggctcgaaaaaactcgggagttgttccgaatgctagcaatatggttatg gttttgaacgaccagggtgaagtggatgtcttagacaatgttaagtatatagaaagtgatgtaacaaagccttacaatga gccacctttagattctcttcaccctacgattaccaacatgttgacggagccactacctccagcactgtcagtgtcacaag gtaaaggtaagtacaactcacctaacaccggccataataccaggagacgaggtcagtcatacaacctccatactgatctg atctccgggggtcagggtccatctctcaccatgcctggggacgatgatagtggtgatgacaatactgatgatgatgatcc tggccagcttgttataaacacagatgaaccatcatcacagcctttgtacacggctcagagccaatctatcaatgcggctc aaaaccaatctatcggcaccaaacctacaggtgaaatgttacctgaccagaacttgactctgctaactgctgaccaggga caattcaatgtaacgggggatttaaggaatgtctcccacgaagagattggtaatcatattcttgtgcaggatttacgaca tgtaggtagtgagctaaagacagctacaaatgagcagatattgcaactagtagctcagactcaacagccaacaaaagctg agcagctttatcctgtagctgtagctgcaaatagaggagaagctccacaagcaggtgccatcaccctgcctggaggtcta cagctacacttccacaacatgatcagtgataaaaatcaaacagttgtgcagctacaaatacaagagagcccatctggaca acagaatctgaatcagcaacttggattactcacaaatgtgactcagaaggtaccacaaactgtcatatcacctgagcctc aacctgtcagttataagaaggcagcagtggctaacaatggagtaccagcatcattctactatcactacataaatcctaaa gctcaagaagacatacaaggtaccaacaattctaacattgcagttactgatgttatgctatctagtagagactcactttc acttaatgagtcggcaggtcaggccttgctacagaatcctcatcagggtattggtaatacacgtcagaatctcattgccg tgtcgtctgccccaacacagtcatatacagatccaaacggtgtttatcctgttcatttctaccaaaatgaatataatcaa aattttcagtaa |
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Protein
| Protein ID | pfu_aug1.0_11916.1_39262.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_11916.1_39262.t1 MLKDHKLIHTEKTPFVCETCGTGFKSRTCLHSHVYHKHNTSRKHACNECDRTFKTKTQLTVHLRTHTGEKPFACPECNGS YRSTTRGNMRLHLTNKHKFTVDKINKLMAEIKPTAEVGIETVDGVSDFKPLPLKKSQPKPAAKKARKNSGVVPNASNMVM VLNDQGEVDVLDNVKYIESDVTKPYNEPPLDSLHPTITNMLTEPLPPALSVSQGKGKYNSPNTGHNTRRRGQSYNLHTDL ISGGQGPSLTMPGDDDSGDDNTDDDDPGQLVINTDEPSSQPLYTAQSQSINAAQNQSIGTKPTGEMLPDQNLTLLTADQG QFNVTGDLRNVSHEEIGNHILVQDLRHVGSELKTATNEQILQLVAQTQQPTKAEQLYPVAVAANRGEAPQAGAITLPGGL QLHFHNMISDKNQTVVQLQIQESPSGQQNLNQQLGLLTNVTQKVPQTVISPEPQPVSYKKAAVANNGVPASFYYHYINPK AQEDIQGTNNSNIAVTDVMLSSRDSLSLNESAGQALLQNPHQGIGNTRQNLIAVSSAPTQSYTDPNGVYPVHFYQNEYNQ NFQ |
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