Gene
| Gene Model ID | pfu_aug1.0_1193.1_00644 |
|---|---|
| Locus | scaffold1193.1 : 521 ... 19568 : + |
| To GenomeBrowser | scaffold1193.1:521..19568 |
| Genes list of scaffold | scaffold1193.1 |
| Synonym | pfu_aug2.0_38.1_26707 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_1193.1_00644.t1 | 2 | 1 | FERM_N | 24 | 88 | 1.0e-14 | 54.3 | 1.1e-16 | 3.4e-13 | 49.4 |
| pfu_aug1.0_1193.1_00644.t1 | 1 | 1 | FERM_M | 125 | 168 | 5.2e-07 | 29.8 | 9.2e-10 | 2.7e-06 | 27.5 |
| pfu_aug1.0_1193.1_00644.t1 | 2 | 2 | FERM_N | 149 | 182 | 1.0e-14 | 54.3 | 0.066 | 200.0 | 2.1 |
| pfu_aug1.0_1193.1_00644.t1 | 1 | 1 | FERM_C | 173 | 260 | 2.6e-20 | 72.4 | 1.9e-23 | 5.6e-20 | 71.3 |
| pfu_aug1.0_1193.1_00644.t1 | 2 | 1 | FA | 268 | 305 | 7.3e-12 | 44.9 | 2.6e-13 | 7.8e-10 | 38.4 |
| pfu_aug1.0_1193.1_00644.t1 | 2 | 2 | FA | 312 | 333 | 7.3e-12 | 44.9 | 0.019 | 56.0 | 3.6 |
| pfu_aug1.0_1193.1_00644.t1 | 1 | 1 | Cornifin | 1176 | 1237 | 7.8e-06 | 25.8 | 6.8e-09 | 2.0e-05 | 24.4 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_1193.1_00644.t1 | gi|260799322|ref|XP_002594646.1| | hypothetical protein BRAFLDRAFT_121759 [Branchiostoma floridae] | 0.0 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)| Libraries | EST count |
|---|---|
| >Embryonic/Larval stages | |
| mix | 2 |
| egg-4cell | 1 |
| trochophore | 1 |
| >Adult tissues | |
| Dshape | 2 |
| maleGonad | 1 |
| mantle | 1 |
Transcript
| Transcript ID | pfu_aug1.0_1193.1_00644.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_1193.1_00644.t1 atgggagaacctggaacagagaagaggggcaagcaccaagtacgccctatcaaatccagggtgtgccgagttgttctatt agatgatacagaatttgctacagatgttgataaacgagcagttggacaaatcttgattgataaagtatgtaagcatctag accttctggagattgattattttggattatcatacatagatcctagtacaggattaaagatgtggttgaataatgagaag aaaatatcaaaacagttaaaagtcacgtactcgcttctgggttcctttacggtacagtcagaacttggagatttcgatgt agaggagtttggaccaggagttgagtacatcagaaaaatgaaatttgctccagcccaagacagggaacttcttaaaaaga tagcagatctacacaaaactcacaaggggcaaactccagaggaagctgagttgaacttcttggaacatgctaagaagtta gctatgtatggtgtggaaattttcgatgctaaggatggagagggtattgacatccagctgggtatatgtgctagcggtat tctggtgttcagggaaaagttacagataaacaaatttgtttggcctaagattctcaaaatgtcgtacagaaggacaaagt tctacataaaactcaggactgcagagtttgatgacttccaaacactcgttggcttcaagtttctgtcatcaaagcatgca aaaagaatgtggaagttttgtgtggaaaaccattcatttttcaggaatcgtgaacctgattcaccaggtaccaggcggac agtacttaggtttggctctcgatttcggtactctggtcgcacacagtttcaagccagacaagccatgcagacggtagatc gaccttctccatatttcgataggaactacagtcagcatgggaagagagccacgtatcatggcaaaaccaaacatcaaaga atagaagatgagatgttcaaaccccgtcctccacctatcacaagggatcctcctatgtttgaccagaatgacgtagacag aaaaccaatcccagaaccagaaatcagggatgaagaggatgttttcgagcatgaggaggagcctgaaaatagaaagagta gaatggagaaaatccatggtatacgcaccccattggcagcagtcatgaaatccgatcatgcagagaacaacaatgtagag cagacaccacctcgtgcacgggattatgacgacgaggaagatgatagcttcaacaagcctcctcttgaggaatctatggt acgtacacgtcatagttacccagatggcttagcaaggggtgggaaaagggaaaagcatgacatagactctataggtgcta atactaacactaacaaaagcaatattataaatcagcgtggtgagaagaggcagcatggaagacgtggtcgctcaaggagt cagagtcaagggaagaaagtttatttcgatgaagaaagtttacagagtgctagttctcatattagtcgaagtgatagtga gctaggacctcaaaaacgcaagacttctattgagagacaatttcagaagaaatcagagagacgacgaccaacaaagcaag ttactatagagtataggggaactccaaattatcatggtcctctgtcatctaatgtagaaacagaaagaagaatgtatgag ataggagatggttctttacataatagaagtgaaattagtgttgatgagggttttgcagatttagatgagtctttttcaag tagtaaggataaaaagtcaataaaaatgatactcaggtatgaacagcctgcatatagcaaagttagaaatagtgaaaatg tgtggttatctggagattattttggaaatcagaaaaatactcgcataccagaactagacctttctcccataacacataaa agtgactctgacttgactcacagtactaatacttccaatactacacatgttactgatgcccctccaatgttgagaagtct gtcgcatgaacctcagcatatctctgttaaaagtcgtagcaaagtacacagagatcaagaggtgtcagatccggtcatgt ccagagaacagaaaaatagactgtatggttatagctcctcagacagctcagataatgaaatggaacagagtttttctagg agttttgttcgaaattctcacctagcaggtagaagagggaggaggaacttatcaacgaactccagatcctctctggagaa aagtcaggaggaaggatctcttttaagaaggaacaaggagagaagggattctttaagaaacgaagaagaatctgaggaac gagatgtgttcaaagatactgaaatgaagaaaggtgaaaatgatcaacggaatattgtccaaacaaaatccgaggcaatt ttattggaaaaatacattattcatcgaccaagtcagacttcgtcaatgtcacaggaggacgatcaatatttagatatgtt gtcaccattttctgtaaacgaaacaccaggagagatggttactgaccacattaaggggacagacaaagaaaatgagcttg atgcccttgctgttgatgttggtatagcagaagtatgtgatcttgaagaaaacttcacctatgccaactttgagaaagga gctagagcaacgtcatctactgacaacatactaaatgagaatattgatgaagttcatagtgattcttcatgctgtaattc taacatagttgagaatgctgatgaattgatggatagtcttgagagatttgattttgaaccttgtgtcaggaggccgaaac ctctcagggaaacagaagatgccaaagatctagctgacaaaagcaaaacatcagaaagcctcggaactgattcgaaaaag gctggaagtaatagagtgcagtttgtagggattgattccatagatttgagaatacctcatcaaatggatcagtgtagtga tagagtagattcaagttctgtgaatttttctgatgacgatcagagaagaccgaaactccagaggttttataccgactcag atggatcgtcctgtacctcagagacaatgtctcccagacaggcttatgacaaggtgggaagtgttcagattcgaccaagc ttggatattcctgtgattcaagtacaaactattactgaaacttcaccagaggaacaggttgaaaaagaaaagttgtccca atcatcaacatctgaggaagaggaatttcatccttgtgaggagtcaagttcttcaaatattgacaaagtcaatcacatac aagaggaaggtaactcacatatttgtgaagatgcaggaaaagatgttacctttaggaatagtgaacctgaaaggagaatt gaagaagaggaggatggggaaattgaacttgattttgataattgtaaaacttccaagtttaatgatgatgatgagatctt acaagtatactcagattctacactgcctagagtactaaaaagaggagcccatgtggagagtgatgatgatcttgataaaa cagaggaaacaaacatagatgaacccgaggaaacaaacattgatgaacaggaggaaacaagcattgatgaacaggaggaa acaaacattgatgaacaggaggaaacaaacattgatgaacaggaggaaacaaacattgatgaaccagaggaaacaaacat tgatgaaccagaggagacaaacatagatgattctgatggtgacaatcatgtagaggaaaatagggaacagatgatagaaa agaagagagatgtttcacatgtggcgcctcaggacacttcattctctacctcagacatatcagatgctgtaggacaatct gaacatgtttctgcattagaagtctcatttgaaagaagtgacattgcattacccaacagtattgaattagaatcatttga atttgaaccatgtgttcgtaaacctaaattttccacaaatgatgatcaaaaagaagaaacaaaagacctgcacagtattg aagatggtcattccacaagtaatcaggttattggtgatgagcaagaagaagggaggacgaatattccatcttctctccat gaggtttccgatcaaaattcattagttgagtcagaattattcattattaaaaatagctcagaacatgtatatttatcaac tccaatatgtgttacagatgaccataactcactagaggattttgttttaaaagaaccccaggtggagcctgaagctcaga attctgcttcacaagaagattttggattgaaagatatagttcattctgaaagaggtagaactggtcctttgacaactgaa aatagaaattctactttacaaagggatcatgtagctcattttgaaagagatacaaattctatggcaagtgaaagtgataa aactgctgtacaaaaagatccttttgcaactgatactgaagaacctatacagtcttttgatagagaagatacagagaatg atgaaatcatgaatcctttactagttaactctgcttccaacagtaggacctgtaatactgtccctacgttaccatcaggt cactcaactttgaagttgtccttctccagctcttttgctcctcatggaagtggtgattcttggaactatttgtctaagat aaaacctccaaaatttgtcgtcccaaaacatctagctaaatcaccggagagacctacattgagctcaaagttttcaccta gacttgggagaccgaattatccagaaaataatgatgatgattcagaaatgtctaaagttcacagatctgtacacagtaat aaagatgacgatactgctaacacggcaccaagcaatgaaaatagttcatccaatgatagtagaccaaattatactcttaa tgtagaatatggagatgcagttctgttgaatactgatgaggacattttctcccagactgacttacctcaaggtattactc tgcttcgtgacaattcatctgtgtataggctaggaaggtatgaaacaaggaaccaagacaggagggagttcaccaacaat cgtattgaaatggatgaacctctgagagagaataaagagaaaaccatggttcagaaggatgagatatcccatttaacgtg gcctcagaatattctgttggaaactcctccatcaaagagagacatttctgaagaatcggagacaccaacgtctgaacctg gtcaagtaagtaatgcagcgaactgttcagatcatgatttgatgttgcttcctgacaatgctgaaggctttgaaggaatg atgctcaggaatgcagacataaacttaaaaccagaggactatacagtgtttactaattattctcaaacatgtgaaccaga catggatgtatttgatggtggaggagttggttgtgacttggttgatccagaagtggatatatcagaggaaatacagtttg ccgacgatactgatggagaatttagattgattgatgaatgccctgacattcagacctcttttcaaccgattggtgaagat aatgttgaagatcagccggaatggaaaacacaaaatttcattgacaggagagaggttttgatggagaaacataggagtga attgacatttggagcctctgaggatcagacacaaagcagtgataaccaaaagcttaaggacggagaagtgaaagatggca ctaaaacatcatccaacgctaaatcgagctcagctccacagaaacaggaatcatcaatagaggagatggtagctgagaat atacctttggaaagacatgaacaaccaaaatacgaaaatagggatgatgagcagccagaggatactacagaaaatggaac tgcagattccaagaagcccatctatgtaaagaaagtttcttggaatcttaaagatgagtatttgggaacatcttcagaaa gttcagacagttttgatctaatgagggaaattccgtttgttgatcaagtgattgacagaggcctgccatcagaatcaagt ggagttcgttatttcaagaccaatacagggaatgctgatgcagtgtgcgttgtggccccaactggtgttgttgcagctcc catttgtgaatctgaggactctgatatagaggattttctattagagggaggtagtaatgagtcgcctaatcttgcacaac aaggtcaaaccgaagaaaaaactgaaatgaaagaggaagtgacgctttcgaaaaagaatgagaaaagcaaagataatgag actgtagaaagaaatattaggagaaatactattgataggaatgaggtagtaccaagtatggtatacagaccaccattaca acgtctgtcatcaaaagaaaattctttcaatatgtataccacaccagaagagcaggacttagcatgtgtagtgtcagaga tagtgctggccattatcatactggcagtatcaatcatgcttctcatcatgttgtga |
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Protein
| Protein ID | pfu_aug1.0_1193.1_00644.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_1193.1_00644.t1 MGEPGTEKRGKHQVRPIKSRVCRVVLLDDTEFATDVDKRAVGQILIDKVCKHLDLLEIDYFGLSYIDPSTGLKMWLNNEK KISKQLKVTYSLLGSFTVQSELGDFDVEEFGPGVEYIRKMKFAPAQDRELLKKIADLHKTHKGQTPEEAELNFLEHAKKL AMYGVEIFDAKDGEGIDIQLGICASGILVFREKLQINKFVWPKILKMSYRRTKFYIKLRTAEFDDFQTLVGFKFLSSKHA KRMWKFCVENHSFFRNREPDSPGTRRTVLRFGSRFRYSGRTQFQARQAMQTVDRPSPYFDRNYSQHGKRATYHGKTKHQR IEDEMFKPRPPPITRDPPMFDQNDVDRKPIPEPEIRDEEDVFEHEEEPENRKSRMEKIHGIRTPLAAVMKSDHAENNNVE QTPPRARDYDDEEDDSFNKPPLEESMVRTRHSYPDGLARGGKREKHDIDSIGANTNTNKSNIINQRGEKRQHGRRGRSRS QSQGKKVYFDEESLQSASSHISRSDSELGPQKRKTSIERQFQKKSERRRPTKQVTIEYRGTPNYHGPLSSNVETERRMYE IGDGSLHNRSEISVDEGFADLDESFSSSKDKKSIKMILRYEQPAYSKVRNSENVWLSGDYFGNQKNTRIPELDLSPITHK SDSDLTHSTNTSNTTHVTDAPPMLRSLSHEPQHISVKSRSKVHRDQEVSDPVMSREQKNRLYGYSSSDSSDNEMEQSFSR SFVRNSHLAGRRGRRNLSTNSRSSLEKSQEEGSLLRRNKERRDSLRNEEESEERDVFKDTEMKKGENDQRNIVQTKSEAI LLEKYIIHRPSQTSSMSQEDDQYLDMLSPFSVNETPGEMVTDHIKGTDKENELDALAVDVGIAEVCDLEENFTYANFEKG ARATSSTDNILNENIDEVHSDSSCCNSNIVENADELMDSLERFDFEPCVRRPKPLRETEDAKDLADKSKTSESLGTDSKK AGSNRVQFVGIDSIDLRIPHQMDQCSDRVDSSSVNFSDDDQRRPKLQRFYTDSDGSSCTSETMSPRQAYDKVGSVQIRPS LDIPVIQVQTITETSPEEQVEKEKLSQSSTSEEEEFHPCEESSSSNIDKVNHIQEEGNSHICEDAGKDVTFRNSEPERRI EEEEDGEIELDFDNCKTSKFNDDDEILQVYSDSTLPRVLKRGAHVESDDDLDKTEETNIDEPEETNIDEQEETSIDEQEE TNIDEQEETNIDEQEETNIDEPEETNIDEPEETNIDDSDGDNHVEENREQMIEKKRDVSHVAPQDTSFSTSDISDAVGQS EHVSALEVSFERSDIALPNSIELESFEFEPCVRKPKFSTNDDQKEETKDLHSIEDGHSTSNQVIGDEQEEGRTNIPSSLH EVSDQNSLVESELFIIKNSSEHVYLSTPICVTDDHNSLEDFVLKEPQVEPEAQNSASQEDFGLKDIVHSERGRTGPLTTE NRNSTLQRDHVAHFERDTNSMASESDKTAVQKDPFATDTEEPIQSFDREDTENDEIMNPLLVNSASNSRTCNTVPTLPSG HSTLKLSFSSSFAPHGSGDSWNYLSKIKPPKFVVPKHLAKSPERPTLSSKFSPRLGRPNYPENNDDDSEMSKVHRSVHSN KDDDTANTAPSNENSSSNDSRPNYTLNVEYGDAVLLNTDEDIFSQTDLPQGITLLRDNSSVYRLGRYETRNQDRREFTNN RIEMDEPLRENKEKTMVQKDEISHLTWPQNILLETPPSKRDISEESETPTSEPGQVSNAANCSDHDLMLLPDNAEGFEGM MLRNADINLKPEDYTVFTNYSQTCEPDMDVFDGGGVGCDLVDPEVDISEEIQFADDTDGEFRLIDECPDIQTSFQPIGED NVEDQPEWKTQNFIDRREVLMEKHRSELTFGASEDQTQSSDNQKLKDGEVKDGTKTSSNAKSSSAPQKQESSIEEMVAEN IPLERHEQPKYENRDDEQPEDTTENGTADSKKPIYVKKVSWNLKDEYLGTSSESSDSFDLMREIPFVDQVIDRGLPSESS GVRYFKTNTGNADAVCVVAPTGVVAAPICESEDSDIEDFLLEGGSNESPNLAQQGQTEEKTEMKEEVTLSKKNEKSKDNE TVERNIRRNTIDRNEVVPSMVYRPPLQRLSSKENSFNMYTTPEEQDLACVVSEIVLAIIILAVSIMLLIML |
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