Gene
| Gene Model ID | pfu_aug1.0_12.1_36213 |
|---|---|
| Locus | scaffold12.1 : 59136 ... 66556 : + |
| To GenomeBrowser | scaffold12.1:59136..66556 |
| Genes list of scaffold | scaffold12.1 |
| Synonym | pfu_aug2.0_1103.1_11437 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_12.1_36213.t1 | 3 | 1 | REJ | 56 | 96 | 5.1e-29 | 100.8 | 0.041 | 200.0 | 0.0 |
| pfu_aug1.0_12.1_36213.t1 | 6 | 1 | PKD | 121 | 184 | 2.9e-16 | 58.9 | 4.3e-07 | 0.0021 | 17.7 |
| pfu_aug1.0_12.1_36213.t1 | 6 | 2 | PKD | 256 | 283 | 2.9e-16 | 58.9 | 0.0068 | 34.0 | 4.3 |
| pfu_aug1.0_12.1_36213.t1 | 6 | 3 | PKD | 351 | 374 | 2.9e-16 | 58.9 | 2.5e-06 | 0.012 | 15.3 |
| pfu_aug1.0_12.1_36213.t1 | 6 | 4 | PKD | 455 | 473 | 2.9e-16 | 58.9 | 0.73 | 3600.0 | -2.3 |
| pfu_aug1.0_12.1_36213.t1 | 6 | 5 | PKD | 548 | 586 | 2.9e-16 | 58.9 | 1.3e-05 | 0.064 | 13.0 |
| pfu_aug1.0_12.1_36213.t1 | 3 | 2 | REJ | 568 | 623 | 5.1e-29 | 100.8 | 0.0099 | 49.0 | 2.0 |
| pfu_aug1.0_12.1_36213.t1 | 6 | 6 | PKD | 620 | 669 | 2.9e-16 | 58.9 | 2.1e-07 | 0.001 | 18.7 |
| pfu_aug1.0_12.1_36213.t1 | 3 | 3 | REJ | 826 | 1170 | 5.1e-29 | 100.8 | 2.5e-31 | 1.2e-27 | 96.3 |
Transcript
| Transcript ID | pfu_aug1.0_12.1_36213.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_12.1_36213.t1 atgaaaggcaaacaggatgttactggatttgaaattgcggtaggaggaactaacttggtgaaattacaacatggcggaaa tgccactgttgaccttgtatatgaaacaggagggtccggactaacattttccgcggggatagatactggtaccacgtttg atacctcgtctgctaataaagatgagacagcgaagaccatatcatacaatataaaccctgctttcctcaacagtgatggg tacggcacttacctcttgaccttcaacttaacaccctcggctggagtgaaagccacgaaagaagttgtgatattctatga ggagccaattctaggatttgcgattaatcgatatccctatctgcccttagacgaagaaatattctttgacgtaactttca cgtcaggatctaacgtggagacggagtggttcctagatagcaatgatacctgcctactgaaacatgatggacaaccacgg aacttaaaccttaatttcaccttcactgtacccggccagcacaatgtcacagttgtcgctgctaacactgttacaagaac gttcgactcgatgcttgtttatgcttactacagggtgaatggattctcactcactgttgatagtgcagtggtaggtacaa cgacagacgccagattcgttgtgctacttacgacgtcagcaaaacaacccatgggcactataaaaatgaacgtaacatat ggagacggacaggaagaaaccaaggaattggatagtgaaatatcaaatatgcagggatcagggtatgccatcacacactc ctacacaatacaaggtaactacacagcagagtttaccatttacaacgaaatagacacaatgaattttactatagatgtat atatatgggacgaggtaacggtcacattgcagtccaaatttattggccaagtctcagaagacatcagcttcgactttatc aaccctcctcccactggtttcacatacattatagaatatggtaacggcgatacacgcacaaacaatgacagtgtttggta taatgcgtatagcgaatcagcatggacctatgcttacaatgcagacgggatatacaatgtaacgatgactgcttggaatc agttctatgccagcgtttgtacctatatcattaccatccagtatcctattgttgaaattaatatgaccttaacaccagag accactaaaatacccataccagatgggataatggactttgagttgacgatgagtaaacaatacacatctccaacagacgt actttgtacttttgattttcaggatgataaagaagagaatgtttctattgccatagaattcggtaccccaattaacaaac ggtatccttacagttcatctggctcacgagttgtaaatttcacttgctggaatctggtcagcactatgactaaactttcc aacattgaaattgttgatttcactttgcaagattttggcgtaaattatccatccccattaactatgaattcaacgttgtc agaagaactcaacgaaaactatccaaaaacatcaaatataatgaaactgagtcacacgacagcaaatgtcactttcttcg tacatctgttagaatgctccaaacttcctccagatatcattttcaaatgggaattcggcgatgacacaccatcggagaga ggcttggtgtcattcgagaaagaacatgtatatgtggaaagaggaacgtttacaatccaagtaactatagacaataacag gacaggagaaacttatgcaatgaccacgtttgacattcaaatcggagttgtacagttcaaagtgaccccacagcgcgggg aggtcagcgtcaccaactttcggtttgattttgagaatgacatgggtggatcggtttcatatacctttgattcacctgtt tcagtacatacgacatcaaataaatatataacgcatacatacaatgattggggtatttatcaggcatccgtccttgcatc taatggaactttgactgaaattgcctttcttgaagaaccagtacaggcagattatttcatctctgacgaactgaaagtga cgattaccaatggtacaggctatgagacagagagtattcatctccctcctgggaacatcactatcactataggagctgct agggccatttcaagaccttatatcaactgttctattaatcttggagatttgataaacaaagaaaatatgtacagatacgg caatataacgatttcccaatcactagaactggacagcaattattacactctcggcaatcattcgctcagagtcgactgtt ccaattttgtttcaaacatctctgaagcatacttcatagatgtccacaatgaatgctacacccgcgacggaatattcgac agacaatattctagtttcaaaacgccaatgaaagcgtatacatcagtggataccagcctagcgagtcggatgggggtaaa gtgcatcgagaaggatgcttcgttcgaatggacggttgatcgggtggaaatcatcaatgaaacagatgtgttaacccctc tagaatatagaccaacctttaacaggggaagcgccagattcgcgcgcggatcagtatctcagggactcctgtatattact ttaaacgtttcacttgatggaacttggatgaatgagtttacctacctacagttcataaaaccagccccttatgcctttat tttgggaggtaacaaaaggtctctcaagtacatggacggtttcgtagaactagatgccttaacagagtcatatgattcag agagaggatatggtggaaactcaaacttaacgttcatatggacgtgctggaaagtgacagcagggagtctcgacgaagta gaaaagaagttcgatacagaacgaaactccttgggaagttgtgtactggacgagagaataaggggatatgctactttgaa tttttctatcgggacgcctacgcagggctatgcaattttcgttgaagttagcgacgggttgaaatcgtctaactttacac agtttatcatattgaagcctggggatccgccgtcgattaagatcacatgtatactgaactgtagagataagacggccatc agctcaccactaattatgaaaactgtgtgtctagactgcagagaagacgaagagatactttatgtttggtccttgtggat ttataactcggtttctaaagactattcccttgtaaacgatctaagtgcaaacacggcaacaggtgtaaaccagccatcca tgaagatcaacgctgatttcatgttacctggtcagaagtactcacttcggttagatgcttcgtctacgatggtaggcagg aacggaacgactaatgttgttaccgcaataatgacaaatttccctccccaggtaggatcggacggagggtgtgttccaga taaaacggagtatcaaaccccaacagaaaaagtgaaagtggattgtaaaaaatttgccgacgagggagatttgatggatc aagattatgatagggatctcttacgaaacgagcctctgatctacttgtatgaaactaaaacaatgagatatgacgatggc gatgaagaggaagtagttgccgagctttacaaagggggttag |
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Protein
| Protein ID | pfu_aug1.0_12.1_36213.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_12.1_36213.t1 MKGKQDVTGFEIAVGGTNLVKLQHGGNATVDLVYETGGSGLTFSAGIDTGTTFDTSSANKDETAKTISYNINPAFLNSDG YGTYLLTFNLTPSAGVKATKEVVIFYEEPILGFAINRYPYLPLDEEIFFDVTFTSGSNVETEWFLDSNDTCLLKHDGQPR NLNLNFTFTVPGQHNVTVVAANTVTRTFDSMLVYAYYRVNGFSLTVDSAVVGTTTDARFVVLLTTSAKQPMGTIKMNVTY GDGQEETKELDSEISNMQGSGYAITHSYTIQGNYTAEFTIYNEIDTMNFTIDVYIWDEVTVTLQSKFIGQVSEDISFDFI NPPPTGFTYIIEYGNGDTRTNNDSVWYNAYSESAWTYAYNADGIYNVTMTAWNQFYASVCTYIITIQYPIVEINMTLTPE TTKIPIPDGIMDFELTMSKQYTSPTDVLCTFDFQDDKEENVSIAIEFGTPINKRYPYSSSGSRVVNFTCWNLVSTMTKLS NIEIVDFTLQDFGVNYPSPLTMNSTLSEELNENYPKTSNIMKLSHTTANVTFFVHLLECSKLPPDIIFKWEFGDDTPSER GLVSFEKEHVYVERGTFTIQVTIDNNRTGETYAMTTFDIQIGVVQFKVTPQRGEVSVTNFRFDFENDMGGSVSYTFDSPV SVHTTSNKYITHTYNDWGIYQASVLASNGTLTEIAFLEEPVQADYFISDELKVTITNGTGYETESIHLPPGNITITIGAA RAISRPYINCSINLGDLINKENMYRYGNITISQSLELDSNYYTLGNHSLRVDCSNFVSNISEAYFIDVHNECYTRDGIFD RQYSSFKTPMKAYTSVDTSLASRMGVKCIEKDASFEWTVDRVEIINETDVLTPLEYRPTFNRGSARFARGSVSQGLLYIT LNVSLDGTWMNEFTYLQFIKPAPYAFILGGNKRSLKYMDGFVELDALTESYDSERGYGGNSNLTFIWTCWKVTAGSLDEV EKKFDTERNSLGSCVLDERIRGYATLNFSIGTPTQGYAIFVEVSDGLKSSNFTQFIILKPGDPPSIKITCILNCRDKTAI SSPLIMKTVCLDCREDEEILYVWSLWIYNSVSKDYSLVNDLSANTATGVNQPSMKINADFMLPGQKYSLRLDASSTMVGR NGTTNVVTAIMTNFPPQVGSDGGCVPDKTEYQTPTEKVKVDCKKFADEGDLMDQDYDRDLLRNEPLIYLYETKTMRYDDG DEEEVVAELYKGG |
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