Gene
| Gene Model ID | pfu_aug1.0_12005.1_32145 |
|---|---|
| Locus | scaffold12005.1 : 1 ... 12775 : + |
| To GenomeBrowser | scaffold12005.1:1..12775 |
| Genes list of scaffold | scaffold12005.1 |
| Synonym | pfu_aug2.0_509.1_30840 |
Manual annotation
| Study field | Reproduction |
|---|---|
| Gene name | Rwd domain-containing protein 4A |
| Description | Best hit to EFN74794 (ant).115 bits, 4e-24 |
| mRNA evidence |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_12005.1_32145.t1 | 2 | 1 | RWD | 5 | 73 | 3.2e-08 | 33.4 | 1.2e-11 | 1.7e-07 | 31.1 |
| pfu_aug1.0_12005.1_32145.t1 | 2 | 2 | RWD | 109 | 145 | 3.2e-08 | 33.4 | 0.048 | 710.0 | 0.1 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_12005.1_32145.t1 | gi|195437819|ref|XP_002066837.1| | GK24690 [Drosophila willistoni] | 2.0e-39 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)| Libraries | EST count |
|---|---|
| >Embryonic/Larval stages | |
| mix | 1 |
| egg-4cell | 1 |
| >Adult tissues | |
| adductorMuscle | 1 |
| mantleEdge | 1 |
| pearlSac | 1 |
Transcript
| Transcript ID | pfu_aug1.0_12005.1_32145.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_12005.1_32145.t1 tatggagaggacggtaaccatagatcatttattgtggaaatctcatggactgacacctatcctgatgatggaccccagat caacttgaacacattttataataagcacatattggatgctgtgaaggagacaattaaaggaggaatttcttcccagatcc ctgatttacttggctgtgccatgacatatacgttgtttgaatgggtaaaagagaacttagaagagctgctggaacagcaa cctctgacacctgtaatagcctatcagtcagaggacaaagaaacagtcagtgatgaaaaggatagaggtcttccaaatgg agacagtaaaaagaaagagaagaaagaacaattatcaaaaaatcaaaaacgaaaactgtacgatcgtctaaatgctgcag gtgaaagaccaagggggtggaactgggtggatgttattaggcatctcagtcaaacaggatcagccaaataa |
|
Protein
| Protein ID | pfu_aug1.0_12005.1_32145.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_12005.1_32145.t1 YGEDGNHRSFIVEISWTDTYPDDGPQINLNTFYNKHILDAVKETIKGGISSQIPDLLGCAMTYTLFEWVKENLEELLEQQ PLTPVIAYQSEDKETVSDEKDRGLPNGDSKKKEKKEQLSKNQKRKLYDRLNAAGERPRGWNWVDVIRHLSQTGSAK |
|