Gene
| Gene Model ID | pfu_aug1.0_120090.1_21080 |
|---|---|
| Locus | scaffold120090.1 : 1 ... 1182 : + |
| To GenomeBrowser | scaffold120090.1:1..1182 |
| Genes list of scaffold | scaffold120090.1 |
| Synonym | pfu_aug2.0_18065.1_19915 |
Manual annotation
| Study field | Reproduction |
|---|---|
| Gene name | Pf-vasa-like protein |
| Description | reciprocal BLASTP best hit to NCBI Accession AAR37337.1 (Crassostrea gigas vasa-like protein). DEAD/DEAH box domain. Continues from pfu_aug1.0_225167.1_35845, connects to pfu_aug1.0_13522.1_61224.t1. |
| mRNA evidence |
| Study field | Reproduction |
|---|---|
| Gene name | Pifuc-vasa-like |
| Description | C terminal part of the DEAD-box helicase domain. Reciprocal BLAST best hit to NCBI AAR37337 (Crasostrea gigas). |
| mRNA evidence |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_120090.1_21080.t1 | 1 | 1 | DEAD | 2 | 107 | 6.8e-25 | 87.5 | 1.0e-28 | 7.6e-25 | 87.3 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_120090.1_21080.t1 | gi|194068383|dbj|BAG55012.1| | vasa [Saccostrea kegaki] | 0.0 |
Transcript
| Transcript ID | pfu_aug1.0_120090.1_21080.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_120090.1_21080.t1 gccaggaagtttgcccacggcaccatgctacggcctgtggtactgtatggagggacctctgtaggctatcagatacggca ggtcgaacagggaaccaatatactggtgggcacaccaggaaggttgatggatatcattggcaaaggaaagataagcttgg aaaagatcaagtatctgatcctagatgaagcagacagaatgctcgacatgggatttggtccagaaattaagaagattgtg actgagatgggaatgccgtcaaagacagacagacagaccctgatgttcagtgctaccttccccaaggaagtacaggagat agctgcggagtacctgaaccactacctgttccttactgtagggagggtaggtggag |
|
Protein
| Protein ID | pfu_aug1.0_120090.1_21080.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_120090.1_21080.t1 ARKFAHGTMLRPVVLYGGTSVGYQIRQVEQGTNILVGTPGRLMDIIGKGKISLEKIKYLILDEADRMLDMGFGPEIKKIV TEMGMPSKTDRQTLMFSATFPKEVQEIAAEYLNHYLFLTVGRVGG |
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