pfu_aug1.0_12025.1_24969: Genome browser

Gene

Gene Model ID	pfu_aug1.0_12025.1_24969
Locus	scaffold12025.1 : 19602 ... 58623 : -
To GenomeBrowser	scaffold12025.1:19602..58623
Genes list of scaffold	scaffold12025.1
Synonym	pfu_aug2.0_1220.1_01480

Manual annotation

Study field	other
Gene name	beta-mannosidase isoform 2
Description	BLASTP best hit to NCBI Accession XP002745589
mRNA evidence

Study field	other
Gene name	beta-mannosidase isoform 2
Description	BLASTP best hit to NCBI Accession XP002745589
mRNA evidence

Hmmer Search for Pfam

query	Total	ID	Target	From	To	Eval	Score	cEval	iEval	Score
pfu_aug1.0_12025.1_24969.t1	1	1	Glyco_hydro_2_C	72	289	2.7e-07	29.8	4.2e-11	6.2e-07	28.6

Blast Hit to nr / sp

query	Subject ID	Subject Name	evalue
pfu_aug1.0_12025.1_24969.t1	gi\|296195885\|ref\|XP_002745588.1\|	PREDICTED: beta-mannosidase [Callithrix jacchus]	0.0

Transcript

Transcript ID	pfu_aug1.0_12025.1_24969.t1
Definition	-
>pfu_aug1.0_12025.1_24969.t1 gtaagctctgtgataacatcagggtcttttaatatagacacgaatctggtgttcacagttgattttaatcggttaattct aggatttccacataaccaggcagaattgaccttccgaaggcgggaaaaatttgagaaattccatgacatcacaatgcaat ttcgatgtttgaccgaggttcgaagcttgtttgtcggaggtatgacattttacttcaaagtgaacgggatgcccatcttc ctgaagggatcaaactggattcctgccgacagttttctggagagagttacaaggaatagaactgatcgtttattggagtc agcaaaggatgtgcacatgaacgctatgagggtttatgagagcgaagatttctatgagctagcagacgagaagggcatca tgttatggcaggactttatgtttggttgtgccatgtacccagctgaccaaggtttcctagataatgttgatgctgaagtt ttacatcaggtcagacgtcttaaacatcacgcatctataatagtatggagtggtaacaacgaaaacgagaaagcactccg gcaaagctggtataacactgacgttaactttacgttatattataacgattacgtcaaactttactcacaaaccgtgtcag tgacagtcaggaacgaggatcctaaccgtccatttatcatgtccagcccgtctaacgggaaagagagtgactcggaagga tttgtggctaaggaaccttggagtgaactatatggtgatatccatgactacagatatctggacccgtactatgaagatgg tgtctacagaatcccccggctggcgtcagagtacggtctacagtcctacccctcccctgagaccctggggaaagtttacc tagatacagacatgacatactggtcagatcttaatgaacacagacaacatcacccaggagattatggagggaagtggaaa atgctgcattactttgcccagcatttcttctcaccccagctcatcgccccgtacctagataacaaccaggtcaaagtcta catgtgtatagaccaggtccccaccctggagcaccgacacccaactacaaatcatctcaaattccatctgaccaatcatc atggctttctctttagtcccttcatcaccaatgacaacacaggtcatgtgactccaaccagagccaatcagaagacagct cagggaatcttacatgtattgatgtactcgtgggataaatttaacccgctctatgaatggaaatatccttactctgtgaa cacgacatcggagtctatatttgagatggacgtcaccagtatgttacagcaatctaactgtatacgtgcccagaactgtt tcctttacttccaccttggtgatccgaccaactcaccaaccgcttacctccccttggatacatataaaaactcacaaggt ctacagaaagctcagtgccaggtaacagatgtgatttcagtaagtggtaagaggcaattccagctgactgtaagctgtgt tgcaatcgctccatttgtctggttggacgtaactggtataccaggacggttttctgataatggttttctgatgattaatc cgcaaaccacggttcagttctacgcatgggaagatacggatgctgacacgttaagtagagtcgtgaccgttaaatcattg atggatgttgttgtagaataa

Transcript ID

pfu_aug1.0_12025.1_24969.t1

Definition

>pfu_aug1.0_12025.1_24969.t1
gtaagctctgtgataacatcagggtcttttaatatagacacgaatctggtgttcacagttgattttaatcggttaattct
aggatttccacataaccaggcagaattgaccttccgaaggcgggaaaaatttgagaaattccatgacatcacaatgcaat
ttcgatgtttgaccgaggttcgaagcttgtttgtcggaggtatgacattttacttcaaagtgaacgggatgcccatcttc
ctgaagggatcaaactggattcctgccgacagttttctggagagagttacaaggaatagaactgatcgtttattggagtc
agcaaaggatgtgcacatgaacgctatgagggtttatgagagcgaagatttctatgagctagcagacgagaagggcatca
tgttatggcaggactttatgtttggttgtgccatgtacccagctgaccaaggtttcctagataatgttgatgctgaagtt
ttacatcaggtcagacgtcttaaacatcacgcatctataatagtatggagtggtaacaacgaaaacgagaaagcactccg
gcaaagctggtataacactgacgttaactttacgttatattataacgattacgtcaaactttactcacaaaccgtgtcag
tgacagtcaggaacgaggatcctaaccgtccatttatcatgtccagcccgtctaacgggaaagagagtgactcggaagga
tttgtggctaaggaaccttggagtgaactatatggtgatatccatgactacagatatctggacccgtactatgaagatgg
tgtctacagaatcccccggctggcgtcagagtacggtctacagtcctacccctcccctgagaccctggggaaagtttacc
tagatacagacatgacatactggtcagatcttaatgaacacagacaacatcacccaggagattatggagggaagtggaaa
atgctgcattactttgcccagcatttcttctcaccccagctcatcgccccgtacctagataacaaccaggtcaaagtcta
catgtgtatagaccaggtccccaccctggagcaccgacacccaactacaaatcatctcaaattccatctgaccaatcatc
atggctttctctttagtcccttcatcaccaatgacaacacaggtcatgtgactccaaccagagccaatcagaagacagct
cagggaatcttacatgtattgatgtactcgtgggataaatttaacccgctctatgaatggaaatatccttactctgtgaa
cacgacatcggagtctatatttgagatggacgtcaccagtatgttacagcaatctaactgtatacgtgcccagaactgtt
tcctttacttccaccttggtgatccgaccaactcaccaaccgcttacctccccttggatacatataaaaactcacaaggt
ctacagaaagctcagtgccaggtaacagatgtgatttcagtaagtggtaagaggcaattccagctgactgtaagctgtgt
tgcaatcgctccatttgtctggttggacgtaactggtataccaggacggttttctgataatggttttctgatgattaatc
cgcaaaccacggttcagttctacgcatgggaagatacggatgctgacacgttaagtagagtcgtgaccgttaaatcattg
atggatgttgttgtagaataa

Protein

Protein ID	pfu_aug1.0_12025.1_24969.t1
Definition	-
>pfu_aug1.0_12025.1_24969.t1 VSSVITSGSFNIDTNLVFTVDFNRLILGFPHNQAELTFRRREKFEKFHDITMQFRCLTEVRSLFVGGMTFYFKVNGMPIF LKGSNWIPADSFLERVTRNRTDRLLESAKDVHMNAMRVYESEDFYELADEKGIMLWQDFMFGCAMYPADQGFLDNVDAEV LHQVRRLKHHASIIVWSGNNENEKALRQSWYNTDVNFTLYYNDYVKLYSQTVSVTVRNEDPNRPFIMSSPSNGKESDSEG FVAKEPWSELYGDIHDYRYLDPYYEDGVYRIPRLASEYGLQSYPSPETLGKVYLDTDMTYWSDLNEHRQHHPGDYGGKWK MLHYFAQHFFSPQLIAPYLDNNQVKVYMCIDQVPTLEHRHPTTNHLKFHLTNHHGFLFSPFITNDNTGHVTPTRANQKTA QGILHVLMYSWDKFNPLYEWKYPYSVNTTSESIFEMDVTSMLQQSNCIRAQNCFLYFHLGDPTNSPTAYLPLDTYKNSQG LQKAQCQVTDVISVSGKRQFQLTVSCVAIAPFVWLDVTGIPGRFSDNGFLMINPQTTVQFYAWEDTDADTLSRVVTVKSL MDVVVE

Protein ID

pfu_aug1.0_12025.1_24969.t1

Definition

>pfu_aug1.0_12025.1_24969.t1
VSSVITSGSFNIDTNLVFTVDFNRLILGFPHNQAELTFRRREKFEKFHDITMQFRCLTEVRSLFVGGMTFYFKVNGMPIF
LKGSNWIPADSFLERVTRNRTDRLLESAKDVHMNAMRVYESEDFYELADEKGIMLWQDFMFGCAMYPADQGFLDNVDAEV
LHQVRRLKHHASIIVWSGNNENEKALRQSWYNTDVNFTLYYNDYVKLYSQTVSVTVRNEDPNRPFIMSSPSNGKESDSEG
FVAKEPWSELYGDIHDYRYLDPYYEDGVYRIPRLASEYGLQSYPSPETLGKVYLDTDMTYWSDLNEHRQHHPGDYGGKWK
MLHYFAQHFFSPQLIAPYLDNNQVKVYMCIDQVPTLEHRHPTTNHLKFHLTNHHGFLFSPFITNDNTGHVTPTRANQKTA
QGILHVLMYSWDKFNPLYEWKYPYSVNTTSESIFEMDVTSMLQQSNCIRAQNCFLYFHLGDPTNSPTAYLPLDTYKNSQG
LQKAQCQVTDVISVSGKRQFQLTVSCVAIAPFVWLDVTGIPGRFSDNGFLMINPQTTVQFYAWEDTDADTLSRVVTVKSL
MDVVVE

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OIST Marine Genomics Unit since 2008