Gene
| Gene Model ID | pfu_aug1.0_12046.1_46458 |
|---|---|
| Locus | scaffold12046.1 : 162 ... 19675 : - |
| To GenomeBrowser | scaffold12046.1:162..19675 |
| Genes list of scaffold | scaffold12046.1 |
| Synonym | pfu_aug2.0_11.1_03413 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_12046.1_46458.t1 | 2 | 1 | Ribosomal_S18 | 19 | 29 | 1.6e-06 | 27.8 | 0.96 | 7100.0 | -3.1 |
| pfu_aug1.0_12046.1_46458.t1 | 2 | 2 | Ribosomal_S18 | 161 | 200 | 1.6e-06 | 27.8 | 5.2e-10 | 3.9e-06 | 26.6 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_12046.1_46458.t1 | gi|156544129|ref|XP_001605882.1| | PREDICTED: 28S ribosomal protein S18b, mitochondrial [Nasonia vitripennis] | 2.0e-26 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)| Libraries | EST count |
|---|---|
| >Embryonic/Larval stages | |
| mix | 1 |
| >Adult tissues | |
Transcript
| Transcript ID | pfu_aug1.0_12046.1_46458.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_12046.1_46458.t1 atgtcgggattttgctcagaacagttcattcgaaccctgaattgttctagacagttaatgaatcatatctgtaaaagagg gaatataagcttgccattatggtcacatctacaggtcttatctacacaccaaagatgccaaactagacagtccattgtct catctcctttttccacgtcatcaaaactcaacaaaatattaagtgtggaaactttcgacgagtctaaaatagaacggccg aaatggtataaagaagaaggaagacatcgctggcaggggccgtataatgaagttagcccagaagtcagtcagcagtatct agaaagtgatgctttcaataatgtgtatggagatgaaccggtatggcttcattatagaagaaatttcaaaggtcatttac agccgtcagttcgagaaaaatgcacaagtaatggattgtacaaaactggtaacccctgtccagtatgtagggacaattat cttcgtatccattataagaatcctaagcttctattacaattctgcgagggtaacacgttgaatgtccgtgacaataacgt tacgggagtctgtaaaaaacaacagaaaaatatcatgaagcatctagcaatagctgtagacagaggtacaatagaggctc cgttgccgttcagaacgtatgactatgatcactacagaaagatggctggtttagactccacgaacacagatacaaaatca aggacaccagattcatga |
|
Protein
| Protein ID | pfu_aug1.0_12046.1_46458.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_12046.1_46458.t1 MSGFCSEQFIRTLNCSRQLMNHICKRGNISLPLWSHLQVLSTHQRCQTRQSIVSSPFSTSSKLNKILSVETFDESKIERP KWYKEEGRHRWQGPYNEVSPEVSQQYLESDAFNNVYGDEPVWLHYRRNFKGHLQPSVREKCTSNGLYKTGNPCPVCRDNY LRIHYKNPKLLLQFCEGNTLNVRDNNVTGVCKKQQKNIMKHLAIAVDRGTIEAPLPFRTYDYDHYRKMAGLDSTNTDTKS RTPDS |
|