Gene
| Gene Model ID | pfu_aug1.0_12059.1_24976 |
|---|---|
| Locus | scaffold12059.1 : 92 ... 5612 : + |
| To GenomeBrowser | scaffold12059.1:92..5612 |
| Genes list of scaffold | scaffold12059.1 |
| Synonym | pfu_aug2.0_1732.1_08542 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_12059.1_24976.t1 | 1 | 1 | Reprolysin | 1 | 96 | 8.2e-08 | 32.0 | 9.3e-11 | 1.7e-07 | 31.0 |
| pfu_aug1.0_12059.1_24976.t1 | 3 | 1 | Reprolysin_5 | 2 | 56 | 5.0e-09 | 36.3 | 2.7e-12 | 5.0e-09 | 36.3 |
| pfu_aug1.0_12059.1_24976.t1 | 2 | 1 | Reprolysin_2 | 15 | 81 | 4.3e-09 | 36.6 | 2.3e-12 | 4.3e-09 | 36.6 |
| pfu_aug1.0_12059.1_24976.t1 | 2 | 1 | Reprolysin_4 | 18 | 82 | 2.2e-06 | 27.3 | 1.2e-09 | 2.2e-06 | 27.3 |
| pfu_aug1.0_12059.1_24976.t1 | 2 | 2 | Reprolysin_2 | 225 | 273 | 4.3e-09 | 36.6 | 0.036 | 66.0 | 3.4 |
| pfu_aug1.0_12059.1_24976.t1 | 3 | 2 | Reprolysin_5 | 226 | 266 | 5.0e-09 | 36.3 | 0.014 | 25.0 | 4.7 |
| pfu_aug1.0_12059.1_24976.t1 | 2 | 2 | Reprolysin_4 | 241 | 266 | 2.2e-06 | 27.3 | 0.24 | 440.0 | 0.2 |
| pfu_aug1.0_12059.1_24976.t1 | 3 | 3 | Reprolysin_5 | 343 | 380 | 5.0e-09 | 36.3 | 0.92 | 1700.0 | -1.3 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_12059.1_24976.t1 | gi|25154132|ref|NP_505901.2| | MIG-17 [Caenorhabditis elegans] | 1.0e-15 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)| Libraries | EST count |
|---|---|
| >Embryonic/Larval stages | |
| mix | 2 |
| trochophore | 1 |
| >Adult tissues | |
Transcript
| Transcript ID | pfu_aug1.0_12059.1_24976.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_12059.1_24976.t1 atgtgcggcaattattcagtttccgtgatcgaggagaaaaggaacgctctttctgtgcacgttgcagcacacgaattagg tcacaatttcggcgctaggcatgacgggaagacaggagcagaatcatgttcagcagacgacaaatatctgatggcgtcaa agatgtctcgggtggacaatcctgttatggcagggaatccttggagtttctcatcgtgttcacgctctagcattcatggc tatattgaaaatctaacaagactgaatagaaactgcttattggattttccaaaagtagaagaaattccccatgaacaaca gcctggtcaatcctacacagttgacgagcaatgtcaggcaatgtatggccaacagtcgtttgtatgtaggttttaccacc aacaagactggagtgcgatatgttacgggttagcctgctggagcccccagaactcagaatgtcaactgatttatcctcac gacggcactccgtgttcaaaccaaaagtggtgccaacaaggtttctgtgtccatgatgaaagagcggacactttggacga gacatgtccatttggtaacgatcctgtatacaactgttccgtccaagattgcataataggaagtttcacacatccattgt gttgtcagttctgtaaacaatatatcacctcaagttctacaagtgttacctcttcgctaccatctacaacggcagtttca cgcgattctgaaacgagtactcttactaaacacgaggaaggacacactaatggcttgacaacggtatgtccttgtgcagg taatgaaaaatcctctactgccagtacgcctcaacagtttgagaaaacttcaactgcaagttcaacggctcattccggcg catcatcagaactcccaacgggaaccacaacatctgctcaacaagaactgtcgtcacctggttcaacgacgcgaacatcg aacactcctttttctgatttaacgtcaatgataactacttatattcctagtacgtcagagacacttaagtcttctactac agttgcgagtacaacacagcatcccacaagtacaaccacggatatgaagacaactcctggattacaaatgcgaacaagtg aatatcattctacattgtctacaatatatactgaaagtagtacgagcaaaccagaaattacgagtacaggaataaaaact acgaatttacctcacagtcagacaacagaaaagacattgaaagttttccttctgaaagaccaagctaggattgcggtttt tatttctttacttgcggttatgtga |
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Protein
| Protein ID | pfu_aug1.0_12059.1_24976.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_12059.1_24976.t1 MCGNYSVSVIEEKRNALSVHVAAHELGHNFGARHDGKTGAESCSADDKYLMASKMSRVDNPVMAGNPWSFSSCSRSSIHG YIENLTRLNRNCLLDFPKVEEIPHEQQPGQSYTVDEQCQAMYGQQSFVCRFYHQQDWSAICYGLACWSPQNSECQLIYPH DGTPCSNQKWCQQGFCVHDERADTLDETCPFGNDPVYNCSVQDCIIGSFTHPLCCQFCKQYITSSSTSVTSSLPSTTAVS RDSETSTLTKHEEGHTNGLTTVCPCAGNEKSSTASTPQQFEKTSTASSTAHSGASSELPTGTTTSAQQELSSPGSTTRTS NTPFSDLTSMITTYIPSTSETLKSSTTVASTTQHPTSTTTDMKTTPGLQMRTSEYHSTLSTIYTESSTSKPEITSTGIKT TNLPHSQTTEKTLKVFLLKDQARIAVFISLLAVM |
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