Gene
| Gene Model ID | pfu_aug1.0_1207.1_65884 |
|---|---|
| Locus | scaffold1207.1 : 57349 ... 81285 : - |
| To GenomeBrowser | scaffold1207.1:57349..81285 |
| Genes list of scaffold | scaffold1207.1 |
| Synonym | NA |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_1207.1_65884.t1 | 6 | 1 | Cadherin | 14 | 85 | 0.0 | 248.0 | 5.2e-07 | 0.0011 | 19.1 |
| pfu_aug1.0_1207.1_65884.t1 | 6 | 2 | Cadherin | 101 | 144 | 0.0 | 248.0 | 5.4e-07 | 0.0011 | 19.1 |
| pfu_aug1.0_1207.1_65884.t1 | 6 | 3 | Cadherin | 160 | 247 | 0.0 | 248.0 | 8.0e-23 | 1.7e-19 | 69.8 |
| pfu_aug1.0_1207.1_65884.t1 | 6 | 4 | Cadherin | 242 | 325 | 0.0 | 248.0 | 6.9e-16 | 1.5e-12 | 47.6 |
| pfu_aug1.0_1207.1_65884.t1 | 6 | 5 | Cadherin | 343 | 434 | 0.0 | 248.0 | 3.3e-22 | 7.0e-19 | 67.8 |
| pfu_aug1.0_1207.1_65884.t1 | 6 | 6 | Cadherin | 456 | 510 | 0.0 | 248.0 | 3.1e-11 | 6.6e-08 | 32.6 |
| pfu_aug1.0_1207.1_65884.t1 | 1 | 1 | Laminin_G_2 | 656 | 733 | 8.0e-10 | 38.8 | 1.2e-12 | 2.5e-09 | 37.2 |
| pfu_aug1.0_1207.1_65884.t1 | 1 | 1 | Cadherin_C | 861 | 1020 | 0.0 | 164.0 | 0.0 | 0.0 | 162.7 |
Transcript
| Transcript ID | pfu_aug1.0_1207.1_65884.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_1207.1_65884.t1 atggcaagctttgaaactacagacaataatggaaataaagtcaaaatcgaggccatcaacttccaagagaggcttggcgg taccatacagtacacagtatatgaaaatgtcaacactaagtcgacaagatttgccgtcgaggatgggaacctgaaaacct tacagcccctggattatgagaccgaccctcattcttttactctcacagttatggctcttgattcctataccggcttgagc agcattgcacagctatgcatctacggtattagaggatcaggaacctggagctgtggttaccaaggtgaattagtaacgag tgccagacttgaccgtgagactcagagctctaggaatctgttcatcaccgtacgagctgtggaccgcggaaatcctccac tagacgactactgtacattcgctatcactgtgggtgacgtcaatgataatgaccccattttcaggtcaaatcaatacaca ggtcagattttaaaagcagcctctgtaggtacagtagtactcactgttcaagcggacgacagcgatctgggaatgaacgc ggccattcagtactcaatcacctccaatcccggagattacttcaggatggataaggacaccggtgaaatttctgttaaca gatcattgaatacagcgagtaacaatgttgttttgtccgtggaagcaaaggatcaagggtcacagccacgaagttctacg tcaacggtcattataacggttcatgcaacagaccctgatacagagagggacagtggaatggagtacgagatagcccaggg cgacagtgtaataaccagtctattctctgtaaaccgtacaacaggggatttaagtctccgaggttccctggaccgggatc gacctaacggacgtgaggtgtaccagtttaacgttctagctatagatgaaccaggaagcagtaccaggcttactggatat gccacggtacaggtgttccctattgacgtcaacgacaatgatcctttcttcttgacgtcatcgctaacagcatctgtgcg agaaatgtctgctgttggcgtttcagtaatgacagtaaaggcagaggactatgatgcgggacagaatgccgaactaacgt ataatatcgttgatggaagccagactcctagagaggccttccgaatgaactctgacggcagcgtgtttactactgttaac aacctggacagggaaaccaaccctacatactactttgaagttgttgcgtcagataatggagtccccaaacgttccaccac tgcaacagcaactgttaacattaaagacataaacgataacagtcccaggttttctcagcgtgttttctttatctctggga agcctatagatgagatgccaaacttctatttttctatcgatgcaaatggagtagtgcgtgtcaaaaatcctttggactat gaaaagattagtacccacatcgtcaaaatcttggccatcgatagaggtttgccaccacagactggtacggctactctgac ggtacgactcaataatataaatgacaacgcaccgaatctacgtgaagataccgttagctttaaggagaacaccccacctg ctatacaagacaaggtgtacatctatgccgaggacccagacggatcgccatttgccgggccgtttacaatcggagaagga aattgtgctcctggcaataatgcatgtgataatttcaacgttgtattttctccaagaatcacagcggctgagtttgtcaa aaattcccttgaaagtttccgaagcttgctcgagacaaaattaaaaggggaagagaatgagaaaaacccaacatccaagg ctcagataatttccgtaacggacacggaagttgacggtgtgaagtattgtgatgtacggtatgctgccctgggttcacca tattatcccgcaagtaaagttgacggaatcgtagagaaggataaagatcaggttgtgacactcactgtcgacaactgcct atccgctgataatgtagagggcgctgttcaggacagaagtccctgcgaggccacaggggcaaccaagggagagaacaagt acctaaacatcaatagtcagttacagctcggtggacgatatgcgttccctcgttatccttccaacatattgtcggctaaa tttagaggctgtatgaggaacttcaggcataatggagagctttatgacctgtacacaaagaatttctatgacggtataaa agatggatgccccgaagaagatatcgtgtgcggtaaaaactcggcaaacgctcgtaaatgtgagaacggcatttgtgaga tgacagaattccctaaccctccttccaaccctggggcaagtgtctgtatctgtaaccctgggtatagaggttcattgtgt caagatgctactacggtgcgtgatttccggaccgacagctttatggactggcaactgaccaacgacttcatcaacagcct gagcacactcctgatcataataatagtagtaggaatcatatttggaaggaaactttgttcaccagcgtcttctgatgcca gaggattcgtggatttagagaaggaagattatgatatccgagaaaatattgtaaactacgatgaagagggggccggtgaa ttcgataatgatgcctttgacatcagcagactgagaaaaccggcagatttgatgacacgaatggatagacccgatttaat ggcaaccaatgaaagaccgcttaaatatacgacgtcacagttaaaagttacgtcaaatgttgtcatgtcgggtcttacga tgtgtaaaatacaagtcaactgcgctggtgcaccaccaggaggccaagttggtgatttcatcgaggatcggttacaggat gccgacgacgatcccagcgcaccgccgcacgataccaccagaaatttcgactacgagggtggaggcagtgatgcagggtc tctgagttcactcaatactacaacgtcagacggagaccaagattatgactatctcaataactggggtcccaaatttgcca agcttgctgatatgtataataattatgaagattcagaatga |
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Protein
| Protein ID | pfu_aug1.0_1207.1_65884.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_1207.1_65884.t1 MASFETTDNNGNKVKIEAINFQERLGGTIQYTVYENVNTKSTRFAVEDGNLKTLQPLDYETDPHSFTLTVMALDSYTGLS SIAQLCIYGIRGSGTWSCGYQGELVTSARLDRETQSSRNLFITVRAVDRGNPPLDDYCTFAITVGDVNDNDPIFRSNQYT GQILKAASVGTVVLTVQADDSDLGMNAAIQYSITSNPGDYFRMDKDTGEISVNRSLNTASNNVVLSVEAKDQGSQPRSST STVIITVHATDPDTERDSGMEYEIAQGDSVITSLFSVNRTTGDLSLRGSLDRDRPNGREVYQFNVLAIDEPGSSTRLTGY ATVQVFPIDVNDNDPFFLTSSLTASVREMSAVGVSVMTVKAEDYDAGQNAELTYNIVDGSQTPREAFRMNSDGSVFTTVN NLDRETNPTYYFEVVASDNGVPKRSTTATATVNIKDINDNSPRFSQRVFFISGKPIDEMPNFYFSIDANGVVRVKNPLDY EKISTHIVKILAIDRGLPPQTGTATLTVRLNNINDNAPNLREDTVSFKENTPPAIQDKVYIYAEDPDGSPFAGPFTIGEG NCAPGNNACDNFNVVFSPRITAAEFVKNSLESFRSLLETKLKGEENEKNPTSKAQIISVTDTEVDGVKYCDVRYAALGSP YYPASKVDGIVEKDKDQVVTLTVDNCLSADNVEGAVQDRSPCEATGATKGENKYLNINSQLQLGGRYAFPRYPSNILSAK FRGCMRNFRHNGELYDLYTKNFYDGIKDGCPEEDIVCGKNSANARKCENGICEMTEFPNPPSNPGASVCICNPGYRGSLC QDATTVRDFRTDSFMDWQLTNDFINSLSTLLIIIIVVGIIFGRKLCSPASSDARGFVDLEKEDYDIRENIVNYDEEGAGE FDNDAFDISRLRKPADLMTRMDRPDLMATNERPLKYTTSQLKVTSNVVMSGLTMCKIQVNCAGAPPGGQVGDFIEDRLQD ADDDPSAPPHDTTRNFDYEGGGSDAGSLSSLNTTTSDGDQDYDYLNNWGPKFAKLADMYNNYEDSE |
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