Gene
Gene Model ID | pfu_aug1.0_12151.1_60997 |
---|---|
Locus | scaffold12151.1 : 9966 ... 16893 : + |
To GenomeBrowser | scaffold12151.1:9966..16893 |
Genes list of scaffold | scaffold12151.1 |
Synonym | NA |
Manual annotation
Study field | other developmental genes |
---|---|
Gene name | Tbx21 |
Description | Blast hits to Eomes, Tbx21, and Tbr1.Simple NJ tree shows an affinity to HsEomes, HsTbx21, and HsTbr1. |
mRNA evidence |
Hmmer Search for Pfam
query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
---|---|---|---|---|---|---|---|---|---|---|
pfu_aug1.0_12151.1_60997.t1 | 1 | 1 | T-box | 1 | 149 | 0.0 | 166.6 | 0.0 | 0.0 | 166.3 |
Blast Hit to nr / sp
query | Subject ID | Subject Name | evalue |
---|---|---|---|
pfu_aug1.0_12151.1_60997.t1 | gi|195129081|ref|XP_002008987.1| | GI11508 [Drosophila mojavensis] | 9.0e-35 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)Libraries | EST count |
---|---|
>Embryonic/Larval stages | |
mix | 1 |
>Adult tissues |
Transcript
Transcript ID | pfu_aug1.0_12151.1_60997.t1 |
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Definition | - |
>pfu_aug1.0_12151.1_60997.t1 atgttcccgtacatcgccgtcacgttccgaggtctccgacctaccgccttatatgacgtcatattggagattgtgtcagc ggatcaaatgcgttataagtacgtcaacgatgcttgggtccccgtgggtcgggctgaaacattccacaccaatgctccct tcgttcaccacgaatgcccatgctatggagaagacttgatgagaaaaagtctgtcgttctcgcgtgtcaagttgaccaac agcaaagagtttgcagacggcaagatgcttttacagtccatgtgtaaatacaccatgagaatcagtgtagttgaaagaga gaaaaggcaaagaatctatccctttctcctgaaggaaactacgttcatagcagtaacagcataccaaaattcaaaaatta ctaacctcaaaattcagaacaatccttttgctaaagcattcagaaaatccagacaaaagagacagtctttggaaaatccg tcctctgatgacgaggagattgtcccaagcaaagcaaagttaaaaactgtctcaacaagcgacacttcaccctccaacag acgttatagttttgatggtgggtatgaatctctgtgtaaattacatgtagctttacagaaagcctag |
Protein
Protein ID | pfu_aug1.0_12151.1_60997.t1 |
---|---|
Definition | - |
>pfu_aug1.0_12151.1_60997.t1 MFPYIAVTFRGLRPTALYDVILEIVSADQMRYKYVNDAWVPVGRAETFHTNAPFVHHECPCYGEDLMRKSLSFSRVKLTN SKEFADGKMLLQSMCKYTMRISVVEREKRQRIYPFLLKETTFIAVTAYQNSKITNLKIQNNPFAKAFRKSRQKRQSLENP SSDDEEIVPSKAKLKTVSTSDTSPSNRRYSFDGGYESLCKLHVALQKA |