Gene
| Gene Model ID | pfu_aug1.0_12151.1_60997 |
|---|---|
| Locus | scaffold12151.1 : 9966 ... 16893 : + |
| To GenomeBrowser | scaffold12151.1:9966..16893 |
| Genes list of scaffold | scaffold12151.1 |
| Synonym | NA |
Manual annotation
| Study field | other developmental genes |
|---|---|
| Gene name | Tbx21 |
| Description | Blast hits to Eomes, Tbx21, and Tbr1.Simple NJ tree shows an affinity to HsEomes, HsTbx21, and HsTbr1. |
| mRNA evidence |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_12151.1_60997.t1 | 1 | 1 | T-box | 1 | 149 | 0.0 | 166.6 | 0.0 | 0.0 | 166.3 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_12151.1_60997.t1 | gi|195129081|ref|XP_002008987.1| | GI11508 [Drosophila mojavensis] | 9.0e-35 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)| Libraries | EST count |
|---|---|
| >Embryonic/Larval stages | |
| mix | 1 |
| >Adult tissues | |
Transcript
| Transcript ID | pfu_aug1.0_12151.1_60997.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_12151.1_60997.t1 atgttcccgtacatcgccgtcacgttccgaggtctccgacctaccgccttatatgacgtcatattggagattgtgtcagc ggatcaaatgcgttataagtacgtcaacgatgcttgggtccccgtgggtcgggctgaaacattccacaccaatgctccct tcgttcaccacgaatgcccatgctatggagaagacttgatgagaaaaagtctgtcgttctcgcgtgtcaagttgaccaac agcaaagagtttgcagacggcaagatgcttttacagtccatgtgtaaatacaccatgagaatcagtgtagttgaaagaga gaaaaggcaaagaatctatccctttctcctgaaggaaactacgttcatagcagtaacagcataccaaaattcaaaaatta ctaacctcaaaattcagaacaatccttttgctaaagcattcagaaaatccagacaaaagagacagtctttggaaaatccg tcctctgatgacgaggagattgtcccaagcaaagcaaagttaaaaactgtctcaacaagcgacacttcaccctccaacag acgttatagttttgatggtgggtatgaatctctgtgtaaattacatgtagctttacagaaagcctag |
|
Protein
| Protein ID | pfu_aug1.0_12151.1_60997.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_12151.1_60997.t1 MFPYIAVTFRGLRPTALYDVILEIVSADQMRYKYVNDAWVPVGRAETFHTNAPFVHHECPCYGEDLMRKSLSFSRVKLTN SKEFADGKMLLQSMCKYTMRISVVEREKRQRIYPFLLKETTFIAVTAYQNSKITNLKIQNNPFAKAFRKSRQKRQSLENP SSDDEEIVPSKAKLKTVSTSDTSPSNRRYSFDGGYESLCKLHVALQKA |
|