Gene
| Gene Model ID | pfu_aug1.0_12154.1_24995 |
|---|---|
| Locus | scaffold12154.1 : 25426 ... 38546 : + |
| To GenomeBrowser | scaffold12154.1:25426..38546 |
| Genes list of scaffold | scaffold12154.1 |
| Synonym | pfu_aug2.0_3884.1_15878 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_12154.1_24995.t1 | 5 | 1 | IQ | 14 | 33 | 2.0e-16 | 57.9 | 2.4e-09 | 7.1e-06 | 25.2 |
| pfu_aug1.0_12154.1_24995.t1 | 5 | 2 | IQ | 37 | 57 | 2.0e-16 | 57.9 | 1.8e-07 | 0.00053 | 19.3 |
| pfu_aug1.0_12154.1_24995.t1 | 5 | 3 | IQ | 64 | 82 | 2.0e-16 | 57.9 | 7.2e-09 | 2.1e-05 | 23.7 |
| pfu_aug1.0_12154.1_24995.t1 | 5 | 4 | IQ | 86 | 104 | 2.0e-16 | 57.9 | 0.0015 | 4.5 | 7.2 |
| pfu_aug1.0_12154.1_24995.t1 | 5 | 5 | IQ | 204 | 211 | 2.0e-16 | 57.9 | 0.61 | 1800.0 | -1.0 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_12154.1_24995.t1 | gi|149019172|gb|EDL77813.1| | myosin Va, isoform CRA_c [Rattus norvegicus] | 8.0e-32 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)| Libraries | EST count |
|---|---|
| >Embryonic/Larval stages | |
| mix | 1 |
| >Adult tissues | |
Transcript
| Transcript ID | pfu_aug1.0_12154.1_24995.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_12154.1_24995.t1 atgaaaaactatttcagacatgcacagtttttacgggaaacgagggctgcaaccagaattcagaaagtttggaaaggctt caaagttcgccgtcattatttacgtgtcaggagagctgctattgttatacagtctgccatcagagggcactatggaagac gattgttccaacaagagctgtatgaacaccgagccatccttatacagaagatggtgcgtacatggctggcgaggaagaag tataagatggttctcagaggaatcgttaaactacaaggtcacttcaggaggaggaaggccaaggctgaactcaagaggct taagattgaggctaagtcagtggaacacataaagaacgtaaacaagggcttagagaataagatcattcagctccagcaga aacttgacggagccgatgtaaatgtagctttggtcttgaaactacaaaacaaaatcaaagacttggaacgagagaggaac gaattacaggaacgtctgcaggaggaagaagacgaaaagaaagaaacgaagcgaggatctgaagtcattagtaactcggc ttttgatgctctcaagaggcaactggtaaatgccgatgatgtccaacttgtcataaagcttcaaaaacgcattgctgatc tagaactaactaaatccaagcttgcaaatgagcttgatgaacgagaagatgaggaggacgagaatatgagttataatata acgactccagagtatgcgtataacaacctgaagagacaagaattggagaatgaaaatgataaactgaagagagaagtaag caaattgatgaaatccatcgccgagacaactgactttgaagccaagggaggtaacctgtctaaagctggcaaggagttta tggccgaacggtccaagaagcactgtaagatttcatcaaattag |
|
Protein
| Protein ID | pfu_aug1.0_12154.1_24995.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_12154.1_24995.t1 MKNYFRHAQFLRETRAATRIQKVWKGFKVRRHYLRVRRAAIVIQSAIRGHYGRRLFQQELYEHRAILIQKMVRTWLARKK YKMVLRGIVKLQGHFRRRKAKAELKRLKIEAKSVEHIKNVNKGLENKIIQLQQKLDGADVNVALVLKLQNKIKDLERERN ELQERLQEEEDEKKETKRGSEVISNSAFDALKRQLVNADDVQLVIKLQKRIADLELTKSKLANELDEREDEEDENMSYNI TTPEYAYNNLKRQELENENDKLKREVSKLMKSIAETTDFEAKGGNLSKAGKEFMAERSKKHCKISSN |
|