Gene
| Gene Model ID | pfu_aug1.0_12166.1_61007 |
|---|---|
| Locus | scaffold12166.1 : 18057 ... 23015 : - |
| To GenomeBrowser | scaffold12166.1:18057..23015 |
| Genes list of scaffold | scaffold12166.1 |
| Synonym | pfu_aug2.0_204.1_13789 |
Manual annotation
| Study field | ribosomal |
|---|---|
| Gene name | Pfu-000018 |
| Description | NCBI blastx best hit to CAQ63457.1. |
| mRNA evidence |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_12166.1_61007.t1 | 1 | 1 | Ribosomal_60s | 112 | 203 | 8.4e-24 | 83.7 | 7.6e-28 | 1.1e-23 | 83.3 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_12166.1_61007.t1 | gi|159145748|gb|ABW90411.1| | putative ribosomal protein P2 [Barentsia elongata] | 3.0e-26 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)| Libraries | EST count |
|---|---|
| >Embryonic/Larval stages | |
| mix | 1 |
| egg-4cell | 1 |
| 8-16cell | 1 |
| egg-Dshape | 1 |
| trochophore | 1 |
| >Adult tissues | |
| Dshape | 1 |
| adductorMuscle | 3 |
| mantle | 1 |
| mantleEdge | 1 |
| mantlePallium | 1 |
| pearlSac | 1 |
Transcript
| Transcript ID | pfu_aug1.0_12166.1_61007.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_12166.1_61007.t1 atgcccccctctcggcagttggggttatttgcagaggtcttttatgtcgaaaagtcttcatgtcgaaaatgtcaaatcgt gtatcccagcgtgcaactcaaaaccttcttcctttcaaccatttccattacacagaaaaggtgtgactacgtttcgtgtc gacgaagacttaaaacgatgacatcttgttttcaatgtggttttaagacttacagcattttattgaaaatgaaagtggaa ccacgtggttttcgactttttcaagtgattgtgaaagaaagaatgcgttacgtagcagcctacttgctcgccagcttggg aggtaatactgccccctcagcagcagatctggagaagatcatagggtctgtaggcattgaagcagaggctgataaagtca agaaaataatcggagaactcaagggaaaagatctagaagaactcatcactgaaggtcagtccaagttggcgtcagtacca tcaggtggcgctgtggctgccggaggtggtggtgccgcaccggctgctgaagcaaaggaagagaagaaagaagagaagaa accagagccagaatctgagagtgacgacgatatgggattcggactctttgattaa |
|
Protein
| Protein ID | pfu_aug1.0_12166.1_61007.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_12166.1_61007.t1 MPPSRQLGLFAEVFYVEKSSCRKCQIVYPSVQLKTFFLSTISITQKRCDYVSCRRRLKTMTSCFQCGFKTYSILLKMKVE PRGFRLFQVIVKERMRYVAAYLLASLGGNTAPSAADLEKIIGSVGIEAEADKVKKIIGELKGKDLEELITEGQSKLASVP SGGAVAAGGGGAAPAAEAKEEKKEEKKPEPESESDDDMGFGLFD |
|