Gene
| Gene Model ID | pfu_aug1.0_12187.1_68461 |
|---|---|
| Locus | scaffold12187.1 : 6336 ... 20365 : + |
| To GenomeBrowser | scaffold12187.1:6336..20365 |
| Genes list of scaffold | scaffold12187.1 |
| Synonym | NA |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_12187.1_68461.t1 | 2 | 1 | Peptidase_M22 | 60 | 108 | 7.4e-35 | 120.7 | 1.5e-11 | 2.3e-07 | 30.5 |
| pfu_aug1.0_12187.1_68461.t1 | 2 | 2 | Peptidase_M22 | 117 | 266 | 7.4e-35 | 120.7 | 2.9e-29 | 4.3e-25 | 88.7 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_12187.1_68461.t1 | gi|291391902|ref|XP_002712383.1| | PREDICTED: probable tRNA N6-adenosine threonylcarbamoyltransferase, mitochondrial isoform X1 [Oryctolagus cuniculus] | 1.0e-39 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)| Libraries | EST count |
|---|---|
| >Embryonic/Larval stages | |
| mix | 1 |
| egg-4cell | 1 |
| 8-16cell | 1 |
| >Adult tissues | |
Transcript
| Transcript ID | pfu_aug1.0_12187.1_68461.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_12187.1_68461.t1 atgataaatgttgcaagaaacctgtcaagtattagaatcaccgaaatcaaaaaagcgctctctttagctcgagcgaatgt caagactctgtcgtctgtatctacacgaagaatcgtccttggtatagagacaagttgtgatgacacgggtgctgctgtcg tggatgagaatggccatgtacttggtgaagcccttcactctcaaacgaagacccatgttgaaaaatatggaggtatacat cctgtcttggccagagacttacatgcagaaaacattggtcctatcgtgtgtgaagcccttggacaagccaacattaaagt acaggtggcacggagcctaaatctgagattattaccccagtgtgccagactcccaggcggagcagctatagaaaagatgg caaagaagggggatccaagggcgtttgatttcccgacaccacaattcaaaacaccaaactgtgactttatgtttagttct ttgtattacaaagcaatccttagagaggaggagaaacatggtataaaaccaggagagatactcccatccgttgctgatat atgcgcttcagtacaatataaccttactttacaattagtacggaaactacagagggctttcattttctgtatgaaaaaca aattacttccagataagcctagcatggtgctgtcagggggcgtggctagtaacctatatattcggaggaacatacaacaa gtgtgtgacgactttgattgtacactagtatgtccaccaccaaagctttgtacagataatggagtcatgatagcatgggg cacaattcaatattacactggtgttttaagtatacatgttttcgttaatgtgactttgatactcaaatttcctatagaca agttggtctatggcttttcgatagctatagaccaaatcaattcattgcggaccaccgttaattttgcatactga |
|
Protein
| Protein ID | pfu_aug1.0_12187.1_68461.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_12187.1_68461.t1 MINVARNLSSIRITEIKKALSLARANVKTLSSVSTRRIVLGIETSCDDTGAAVVDENGHVLGEALHSQTKTHVEKYGGIH PVLARDLHAENIGPIVCEALGQANIKVQVARSLNLRLLPQCARLPGGAAIEKMAKKGDPRAFDFPTPQFKTPNCDFMFSS LYYKAILREEEKHGIKPGEILPSVADICASVQYNLTLQLVRKLQRAFIFCMKNKLLPDKPSMVLSGGVASNLYIRRNIQQ VCDDFDCTLVCPPPKLCTDNGVMIAWGTIQYYTGVLSIHVFVNVTLILKFPIDKLVYGFSIAIDQINSLRTTVNFAY |
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