Gene
| Gene Model ID | pfu_aug1.0_12197.1_46471 |
|---|---|
| Locus | scaffold12197.1 : 16912 ... 31296 : - |
| To GenomeBrowser | scaffold12197.1:16912..31296 |
| Genes list of scaffold | scaffold12197.1 |
| Synonym | pfu_aug2.0_8.1_26639 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_12197.1_46471.t1 | 1 | 1 | GTP_EFTU | 11 | 163 | 2.29953e-42 | 144.5 | 1.4013e-45 | 3.30006e-42 | 144.0 |
| pfu_aug1.0_12197.1_46471.t1 | 2 | 1 | GTP_EFTU_D3 | 186 | 196 | 2.5e-13 | 50.0 | 0.31 | 1200.0 | -0.3 |
| pfu_aug1.0_12197.1_46471.t1 | 1 | 1 | GTP_EFTU_D2 | 188 | 257 | 2.7e-14 | 53.0 | 1.5e-17 | 5.5e-14 | 52.0 |
| pfu_aug1.0_12197.1_46471.t1 | 2 | 2 | GTP_EFTU_D3 | 262 | 353 | 2.5e-13 | 50.0 | 4.8e-16 | 1.8e-12 | 47.2 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_12197.1_46471.t1 | gi|241684485|ref|XP_002401272.1| | translation elongation factor, putative [Ixodes scapularis] | 0.0 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)| Libraries | EST count |
|---|---|
| >Embryonic/Larval stages | |
| mix | 1 |
| egg-Dshape | 1 |
| >Adult tissues | |
| Dshape | 1 |
| adductorMuscle | 1 |
| maleGonad | 1 |
| mantleEdge | 1 |
| pearlSac | 1 |
Transcript
| Transcript ID | pfu_aug1.0_12197.1_46471.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_12197.1_46471.t1 aaaaaaaccaagcaacattcaaaagatatgatgagattgaccatgcaccggaggagaagaagcgtggtataacaatcaac gctgccatggtggaatatgaaacggacaagaggcattatggtcatacagattgtcctggacatttggattacatcaaaaa catgattattgggacaacacagatggatggctgtatactagtcattgctgctacggatggatgcatgccgcaaaccaaag aacatttgctactcgcaagacaaattggtataaaaaatattgttgttttcgtgaacaaagcagatgcgtgtgacgaggaa atgattgaacttgtattaatggagattcaagaattgttagaactgaatggttacagctcagaggaaacaccaatcataat tggatccgccctgaatgcattgaatggtgagaacccagatcttggtgagaaaaagatcagagaattattggatgctgtag acagccattttgcattaccccagagagatttggagaagcctttccaaatgcccttggaacatctttacgccattactggt cgtggcactgtagcaacaggaaaaatagagcatggtgtcatcaagaagggagatgtatgcgaaattgtcgggcatgacaa aattcacaagtcagctattaacggaatcgaaatgttccgaaaacaactagaccagggacaagcaggagatacagtaggtg ttttactgaaaggctttaaaaaggatgaactgagacgtggacacatcatatgtaaacccggcacactgaagattcataac cagtttgagggccaactatttttggtttcggaaaaggatggtgggagatcaaaaccattacttaacaagcaccaggtcag tatcttcagtaaaacgtggaatatttcagcttacacagaaatgaaaggaaaagaaatgatcatgccaggagaggaggcta ccctgaacttcaaaatgtataggttgatgggaatgcatgaaggccaacgttttacagtgagagatggttcaaaaacaatc ggatatggtgtctgtacaaaatgtctaccaaactttaatttagaagagtatgagaagtcacgcaaagaggagaaaaaaca gaaaaaaaaggcgaaagaggcggagggtcactaa |
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Protein
| Protein ID | pfu_aug1.0_12197.1_46471.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_12197.1_46471.t1 KNQATFKRYDEIDHAPEEKKRGITINAAMVEYETDKRHYGHTDCPGHLDYIKNMIIGTTQMDGCILVIAATDGCMPQTKE HLLLARQIGIKNIVVFVNKADACDEEMIELVLMEIQELLELNGYSSEETPIIIGSALNALNGENPDLGEKKIRELLDAVD SHFALPQRDLEKPFQMPLEHLYAITGRGTVATGKIEHGVIKKGDVCEIVGHDKIHKSAINGIEMFRKQLDQGQAGDTVGV LLKGFKKDELRRGHIICKPGTLKIHNQFEGQLFLVSEKDGGRSKPLLNKHQVSIFSKTWNISAYTEMKGKEMIMPGEEAT LNFKMYRLMGMHEGQRFTVRDGSKTIGYGVCTKCLPNFNLEEYEKSRKEEKKQKKKAKEAEGH |
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