Gene
| Gene Model ID | pfu_aug1.0_12256.1_03211 |
|---|---|
| Locus | scaffold12256.1 : 15371 ... 19945 : - |
| To GenomeBrowser | scaffold12256.1:15371..19945 |
| Genes list of scaffold | scaffold12256.1 |
| Synonym | pfu_aug2.0_81.1_03576 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_12256.1_03211.t1 | 3 | 1 | WD40 | 2 | 25 | 7.9e-25 | 85.7 | 8.9e-11 | 6.6e-07 | 28.9 |
| pfu_aug1.0_12256.1_03211.t1 | 3 | 2 | WD40 | 35 | 70 | 7.9e-25 | 85.7 | 1.6e-13 | 1.2e-09 | 37.6 |
| pfu_aug1.0_12256.1_03211.t1 | 3 | 3 | WD40 | 75 | 103 | 7.9e-25 | 85.7 | 3.7e-09 | 2.8e-05 | 23.8 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_12256.1_03211.t1 | gi|210076889|gb|ACJ06767.1| | receptor for activated C-kinase [Pinctada fucata] | 0.0 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)| Libraries | EST count |
|---|---|
| >Embryonic/Larval stages | |
| egg-4cell | 1 |
| 8-16cell | 1 |
| egg-Dshape | 1 |
| trochophore | 1 |
| >Adult tissues | |
| Dshape | 1 |
| adductorMuscle | 1 |
| maleGonad | 2 |
| mantleEdge | 1 |
| mantlePallium | 1 |
| pearlSac | 1 |
Transcript
| Transcript ID | pfu_aug1.0_12256.1_03211.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_12256.1_03211.t1 atgagcgtagccttctccgctgacaacagacagattgtatctggatccagagacaagtccattaaactgtggaacacact gggagtgtgcaagtacaccattcaggatgaaggccacaacgattgggcctcctgtgtacgtttctctccaaacacagcaa accccatcatcgtgtcatgtggatgggataaaatggtcaaggtatggaatttgaccaactgcaagctaaagaccaaccac attggacataatggatacctgaattgtgttacagtatcaccagatggttcactgtgtgcctcaggtggaaaggtagtatt ttatctgtctggcatttcagtagggcataataaaaagcatcgacaaatttga |
|
Protein
| Protein ID | pfu_aug1.0_12256.1_03211.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_12256.1_03211.t1 MSVAFSADNRQIVSGSRDKSIKLWNTLGVCKYTIQDEGHNDWASCVRFSPNTANPIIVSCGWDKMVKVWNLTNCKLKTNH IGHNGYLNCVTVSPDGSLCASGGKVVFYLSGISVGHNKKHRQI |
|