Gene
| Gene Model ID | pfu_aug1.0_12278.1_03218 |
|---|---|
| Locus | scaffold12278.1 : 1 ... 13235 : - |
| To GenomeBrowser | scaffold12278.1:1..13235 |
| Genes list of scaffold | scaffold12278.1 |
| Synonym | pfu_aug2.0_125.1_16968 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_12278.1_03218.t1 | 1 | 1 | Tetraspannin | 125 | 373 | 1.4e-35 | 122.5 | 5.2e-39 | 1.9e-35 | 122.1 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_12278.1_03218.t1 | gi|348544452|ref|XP_003459695.1| | PREDICTED: tetraspanin-5-like isoform X1 [Oreochromis niloticus] | 7.0e-39 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)| Libraries | EST count |
|---|---|
| >Embryonic/Larval stages | |
| mix | 1 |
| >Adult tissues | |
Transcript
| Transcript ID | pfu_aug1.0_12278.1_03218.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_12278.1_03218.t1 atggcttttggtttgtatccaccaggagacgatgagtctgaaactgacatcagatccttcatgatctcccccagcacctc cacgtcatcaccggctcagagaacaggtgacggatacaatggttatgacatgactatattcgatggattccgtgggaagt acgataatgtggcaacgtcacttccttcagactctgatgacgatacgcactgtgatgacgtagcaagtcgtactacagat gacgctgatcgatcacgaaccgagtacaagttacggtccagtggagaaacatcggagagtaacatgcgccggatggtccg gcgactgagcagtttccacgaaagaataccgattcgaattcaaaattttcttttgaagtacacattgttttcctttaact ttttatcgtggttgacaggaatgacagcggtcggggtgggaacctggcagctaacagatgaaaacaaagtcatttctgat gccgttaatttcattctggatccattcgttgtgttgtgtataattggtgctataacattcacagttgccttccttggatg tgtaggagccgcacgagaacatgcattcatgatcaaaatgtttcacattgccttatcggttgtgctagtggttgagctcg tatgtggtgcacttgtaattatattctactccaaccctgactttcgggaatggctcaggctaacaccagacaaactgctg aaagatgccattcttaaatatatggacgacaagggtgtccaggtgtggatggatatgattcagaaacagtttcagtgctg cggtataagtgcaacggactatggttataaagactggcagctcaatatgtattataactgttccgatatcaatccaagtg tttacgcatgcgcagttccagaatcgtgttgcattgtttacccgggcgaaagaatgaataaaatgtgtggatttgacaaa tcagacaaaaagctatcagatgtcagggagtggatatacacccaggggtgtgttaaaggcttcggtgaatggatatcaaa tcatgaaatggtaatcttgctcaccgcatgtgtcgttatgtttatgcagtttctaggagtcgtctttgcaaggatatttg tcaaaaggatacagcggcggatcaaatggaccaagaatagaaacagacggtgtagctga |
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Protein
| Protein ID | pfu_aug1.0_12278.1_03218.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_12278.1_03218.t1 MAFGLYPPGDDESETDIRSFMISPSTSTSSPAQRTGDGYNGYDMTIFDGFRGKYDNVATSLPSDSDDDTHCDDVASRTTD DADRSRTEYKLRSSGETSESNMRRMVRRLSSFHERIPIRIQNFLLKYTLFSFNFLSWLTGMTAVGVGTWQLTDENKVISD AVNFILDPFVVLCIIGAITFTVAFLGCVGAAREHAFMIKMFHIALSVVLVVELVCGALVIIFYSNPDFREWLRLTPDKLL KDAILKYMDDKGVQVWMDMIQKQFQCCGISATDYGYKDWQLNMYYNCSDINPSVYACAVPESCCIVYPGERMNKMCGFDK SDKKLSDVREWIYTQGCVKGFGEWISNHEMVILLTACVVMFMQFLGVVFARIFVKRIQRRIKWTKNRNRRCS |
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