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OIST Marine Genomics Unit since 2008

Gene
Gene Model IDpfu_aug1.0_123986.1_28286
Locus scaffold123986.1 : 1 ... 525 : -
To GenomeBrowser scaffold123986.1:1..525
Genes list of scaffold scaffold123986.1
Synonym pfu_aug2.0_554.1_14301

Manual annotation
Hmmer Search for Pfam
query Total ID Target From To Eval Score cEval iEval Score
pfu_aug1.0_123986.1_28286.t1 1 1 UPF0061 1 110 4.1e-37 127.6 3.00004e-41 4.5e-37 127.4

Blast Hit to nr / sp
query Subject ID Subject Name evalue
pfu_aug1.0_123986.1_28286.t1 gi|115638715|ref|XP_786396.2| 6.0e-38

Transcript
Transcript IDpfu_aug1.0_123986.1_28286.t1
Definition-
>pfu_aug1.0_123986.1_28286.t1
atgattgccaagtggcagagtgtaggattcacacatggtgtatgtaacaccgataactatagtctcctgtctataactat
agattatggtccatttggatttctggatgagtataatccagattttattccgaacacgtcggatgacgaagggcgatata
attatagaaaacagccagatattggtctgtggaatctcgataaattacgaatcgctatgctacctctgctcaatcaggat
caaaagaaacagatggctaatattttgaacgggtatgaaagtatttattctaagctatatatagaaacgtttttgaagaa
acttggtttgaaaac

Protein
Protein IDpfu_aug1.0_123986.1_28286.t1
Definition-
>pfu_aug1.0_123986.1_28286.t1
MIAKWQSVGFTHGVCNTDNYSLLSITIDYGPFGFLDEYNPDFIPNTSDDEGRYNYRKQPDIGLWNLDKLRIAMLPLLNQD
QKKQMANILNGYESIYSKLYIETFLKKLGLK

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