Gene
| Gene Model ID | pfu_aug1.0_124.1_65238 |
|---|---|
| Locus | scaffold124.1 : 1198 ... 4085 : - |
| To GenomeBrowser | scaffold124.1:1198..4085 |
| Genes list of scaffold | scaffold124.1 |
| Synonym | pfu_aug2.0_474.1_14192 |
Manual annotation
| Study field | Reproduction |
|---|---|
| Gene name | C1q domain containing protein |
| Description | Best hit to FR715641 (MgC1q62). 60 bits, 2e-07 |
| mRNA evidence |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_124.1_65238.t1 | 1 | 1 | C1q | 105 | 223 | 1.1e-25 | 90.0 | 1.1e-29 | 1.7e-25 | 89.4 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_124.1_65238.t1 | gi|260818350|ref|XP_002604346.1| | hypothetical protein BRAFLDRAFT_124212 [Branchiostoma floridae] | 6.0e-14 |
Transcript
| Transcript ID | pfu_aug1.0_124.1_65238.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_124.1_65238.t1 atgttgttccccaaagtcctttgtgcattgctttttatttgtccgaataccgaaggatcgaccaactcgacaagcatact tgttgatcagatgaaaagattgaagtctgagacgaaggaaatgccatacatgacaggttatcaccagggaagaacacatg aaaagttggatagactccttggaatcaaccaaaatgccattaatcaacagagaattttgtcccgacaggactttctcgaa aaactggtgaagaaacataaaaaagaaaatgacagaagatttctacaaaagacagatgacgacaaagccattgcatttac tgtatcatcatcatcccacttgactaatcatgacaaccagaaaattatctacgacatggtgatcacaaatacaggaaata cctacaacaaaactacaggtatatttacctgtcctgtctcaggtacatacgtttttacctggtctgtcatgtcaaagagt accaaggaaatgtgtcatgcacatctccataacggtatcaagaagatgatggcacacggctatgatagcggtcactacaa agcagccagtaataccatggtgctctcactaaacgtgggtgaacttgtgtggatagagacatctcatggtaaatactgct acggatatcccttcacgggattctctggctggaaattgtaa |
|
Protein
| Protein ID | pfu_aug1.0_124.1_65238.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_124.1_65238.t1 MLFPKVLCALLFICPNTEGSTNSTSILVDQMKRLKSETKEMPYMTGYHQGRTHEKLDRLLGINQNAINQQRILSRQDFLE KLVKKHKKENDRRFLQKTDDDKAIAFTVSSSSHLTNHDNQKIIYDMVITNTGNTYNKTTGIFTCPVSGTYVFTWSVMSKS TKEMCHAHLHNGIKKMMAHGYDSGHYKAASNTMVLSLNVGELVWIETSHGKYCYGYPFTGFSGWKL |
|