Gene
| Gene Model ID | pfu_aug1.0_12406.1_39328 |
|---|---|
| Locus | scaffold12406.1 : 26014 ... 31325 : - |
| To GenomeBrowser | scaffold12406.1:26014..31325 |
| Genes list of scaffold | scaffold12406.1 |
| Synonym | pfu_aug2.0_8.1_26624 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_12406.1_39328.t1 | 2 | 1 | UBACT | 1 | 57 | 4.8e-24 | 83.7 | 6.6e-27 | 3.3e-23 | 81.0 |
| pfu_aug1.0_12406.1_39328.t1 | 1 | 1 | UBA_e1_C | 64 | 189 | 0.0 | 178.9 | 0.0 | 0.0 | 178.5 |
| pfu_aug1.0_12406.1_39328.t1 | 2 | 2 | UBACT | 155 | 166 | 4.8e-24 | 83.7 | 0.089 | 440.0 | 0.5 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_12406.1_39328.t1 | gi|348553557|ref|XP_003462593.1| | PREDICTED: ubiquitin-like modifier-activating enzyme 1 isoform X1 [Cavia porcellus] | 0.0 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)| Libraries | EST count |
|---|---|
| >Embryonic/Larval stages | |
| mix | 1 |
| >Adult tissues | |
| maleGonad | 1 |
| mantle | 1 |
Transcript
| Transcript ID | pfu_aug1.0_12406.1_39328.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_12406.1_39328.t1 atggactttatagttgcttgttcaaatttacgtgcagagaattacagtatacctccagcggatcgttcaaagagtaaatt aatagcaggaaaaatcattccagccattgccacaacaactgcgttaatagtaggtcttgtgggtatagagatgatcaaat tgattcaaggacacaaaaaattagatccctacaaaaatggatttgtaaatttagcattgccattctttgcattctccgag cctatatcagctcccaagaataagtactatgacacagaattttcattatgggacagatttgaagtacaaggagagatgac attaaagcaattcatagattacttcaagaatgagcacaagttagagataactatgctgtctcagggtgtatccatgctct attcattcttcatgccaccagcaaaacgcaaggaaagaatggagctgccgatgtcggaggtggtcaaacgagtatccaaa aagaagattcctagtcatgttaaagctctagtactggaaatttgctgtaatgatgaatctggagaagacgtagaaattcc gtacgtcaagtataatctaccgcagtaa |
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Protein
| Protein ID | pfu_aug1.0_12406.1_39328.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_12406.1_39328.t1 MDFIVACSNLRAENYSIPPADRSKSKLIAGKIIPAIATTTALIVGLVGIEMIKLIQGHKKLDPYKNGFVNLALPFFAFSE PISAPKNKYYDTEFSLWDRFEVQGEMTLKQFIDYFKNEHKLEITMLSQGVSMLYSFFMPPAKRKERMELPMSEVVKRVSK KKIPSHVKALVLEICCNDESGEDVEIPYVKYNLPQ |
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