Gene
| Gene Model ID | pfu_aug1.0_1248.1_36889 |
|---|---|
| Locus | scaffold1248.1 : 18646 ... 30872 : + |
| To GenomeBrowser | scaffold1248.1:18646..30872 |
| Genes list of scaffold | scaffold1248.1 |
| Synonym | pfu_aug2.0_1145.1_18129 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_1248.1_36889.t1 | 2 | 1 | F5_F8_type_C | 24 | 55 | 1.9e-08 | 34.2 | 0.0084 | 7.3 | 6.4 |
| pfu_aug1.0_1248.1_36889.t1 | 2 | 2 | F5_F8_type_C | 44 | 94 | 1.9e-08 | 34.2 | 6.6e-11 | 5.7e-08 | 32.6 |
| pfu_aug1.0_1248.1_36889.t1 | 3 | 1 | I-set | 116 | 192 | 9.8e-12 | 44.5 | 1.2e-08 | 1.1e-05 | 25.2 |
| pfu_aug1.0_1248.1_36889.t1 | 2 | 1 | Ig_3 | 119 | 190 | 1.2e-10 | 41.7 | 1.6e-08 | 1.4e-05 | 25.4 |
| pfu_aug1.0_1248.1_36889.t1 | 2 | 1 | V-set | 119 | 191 | 1.7e-07 | 31.0 | 6.0e-06 | 0.0052 | 16.6 |
| pfu_aug1.0_1248.1_36889.t1 | 3 | 1 | Ig_2 | 120 | 193 | 9.2e-13 | 48.1 | 2.1e-07 | 0.00019 | 21.5 |
| pfu_aug1.0_1248.1_36889.t1 | 3 | 1 | ig | 122 | 187 | 5.9e-07 | 29.5 | 1.6e-05 | 0.014 | 15.5 |
| pfu_aug1.0_1248.1_36889.t1 | 3 | 2 | Ig_2 | 215 | 283 | 9.2e-13 | 48.1 | 3.0e-06 | 0.0026 | 17.8 |
| pfu_aug1.0_1248.1_36889.t1 | 2 | 2 | V-set | 216 | 288 | 1.7e-07 | 31.0 | 4.6e-06 | 0.004 | 17.0 |
| pfu_aug1.0_1248.1_36889.t1 | 3 | 2 | I-set | 217 | 284 | 9.8e-12 | 44.5 | 8.2e-05 | 0.071 | 12.9 |
| pfu_aug1.0_1248.1_36889.t1 | 3 | 2 | ig | 218 | 283 | 5.9e-07 | 29.5 | 8.8e-05 | 0.077 | 13.1 |
| pfu_aug1.0_1248.1_36889.t1 | 2 | 2 | Ig_3 | 221 | 284 | 1.2e-10 | 41.7 | 1.6e-05 | 0.014 | 15.8 |
| pfu_aug1.0_1248.1_36889.t1 | 3 | 3 | Ig_2 | 303 | 343 | 9.2e-13 | 48.1 | 0.025 | 22.0 | 5.2 |
| pfu_aug1.0_1248.1_36889.t1 | 3 | 3 | I-set | 313 | 363 | 9.8e-12 | 44.5 | 0.18 | 150.0 | 2.2 |
| pfu_aug1.0_1248.1_36889.t1 | 3 | 3 | ig | 316 | 339 | 5.9e-07 | 29.5 | 1.0 | 870.0 | 0.1 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_1248.1_36889.t1 | gi|260790389|ref|XP_002590225.1| | hypothetical protein BRAFLDRAFT_97412 [Branchiostoma floridae] | 3.0e-11 |
Transcript
| Transcript ID | pfu_aug1.0_1248.1_36889.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_1248.1_36889.t1 atggaagcctcgtctttttacgaagacacccggtatcacgatgggccatcacgtgcccggctgaatcaggaaccggagga aaactcaaacaaagatggcgaccttgtaacgcaaggtggtggttggctcgctggatcatccgacagaaatcagtggattc agttctttcgagggaattatgaccaggatacggttgtgtccagacgtttaccttttcccgtgatagcccgatatgttcgt attgtacctacagagtggaacgaaaatatcgccctcagatttgacattaaaggttgctccattcccaaaaatatacgaat gatttacccaaaccaagatttcataaatattgaggtcccaaagaagcttgaaattacctgcgaatatactggaccatcaa acgctaacatcacctggttcaaagatggctaccggatattgcatcatcatggcttcacattgaaatcaaccataactctg aagaatggaaggacaactgttgtgtcttctttatttaaagtatcgacggtctactcagattccggaaaatatagttgcaa aattgaaaacacaacactgactaaagctgtggcggtacatgcagtcaggtttgataaacttccgagctacagtcgctact ggctggttcacggcagtcctttccatctatcgtgtacctacaaatctcgagaaaaacgacagttcacttgggaatacgaa aatatgtacataggaagtttcggatttgatgtcaattcagaggccaaggtgaaagatggcgccgtggaactgacatcatc ggtgtcaaagacgagcgttagtagaaaggacgagggaaagtatacatgtctgattggcggaatggagaagcaatgggacg tccgtgtacttaaaccaaaagggaatggtacctctcaaaaattaaaactgtacgaaccaatgtacttggactgcaacgta gagggcctgaccgatgacgtcagattcgaacgtttttggaccaggggcggatccagaataagtcaaatggactccaaggg gcgtatgaactacctaccggacgggaaaatgctccaaattatagatgcagatacaaagcctaaccagaactctccagtag tcattgtggtggttataatctgtgctcttgtcattgttttggtgctcctctgtggcgcatgcgcatatttcaacagacga cgaagaaaacacaagtacacggcttatgacggtaagcgaagttttagagtagatacttttgcgaaaaagaaaaatcgtta tgaaaattatgggaatggaagggtttga |
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Protein
| Protein ID | pfu_aug1.0_1248.1_36889.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_1248.1_36889.t1 MEASSFYEDTRYHDGPSRARLNQEPEENSNKDGDLVTQGGGWLAGSSDRNQWIQFFRGNYDQDTVVSRRLPFPVIARYVR IVPTEWNENIALRFDIKGCSIPKNIRMIYPNQDFINIEVPKKLEITCEYTGPSNANITWFKDGYRILHHHGFTLKSTITL KNGRTTVVSSLFKVSTVYSDSGKYSCKIENTTLTKAVAVHAVRFDKLPSYSRYWLVHGSPFHLSCTYKSREKRQFTWEYE NMYIGSFGFDVNSEAKVKDGAVELTSSVSKTSVSRKDEGKYTCLIGGMEKQWDVRVLKPKGNGTSQKLKLYEPMYLDCNV EGLTDDVRFERFWTRGGSRISQMDSKGRMNYLPDGKMLQIIDADTKPNQNSPVVIVVVIICALVIVLVLLCGACAYFNRR RRKHKYTAYDGKRSFRVDTFAKKKNRYENYGNGRV |
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