Gene
| Gene Model ID | pfu_aug1.0_12564.1_32224 |
|---|---|
| Locus | scaffold12564.1 : 1233 ... 14714 : - |
| To GenomeBrowser | scaffold12564.1:1233..14714 |
| Genes list of scaffold | scaffold12564.1 |
| Synonym | pfu_aug2.0_14.1_13402 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_12564.1_32224.t1 | 7 | 1 | GCC2_GCC3 | 5 | 53 | 0.0 | 230.9 | 8.2e-13 | 2.4e-09 | 36.6 |
| pfu_aug1.0_12564.1_32224.t1 | 8 | 1 | NCD3G | 14 | 40 | 7.2e-10 | 38.4 | 6.3e-05 | 0.19 | 11.4 |
| pfu_aug1.0_12564.1_32224.t1 | 8 | 2 | NCD3G | 32 | 53 | 7.2e-10 | 38.4 | 0.013 | 39.0 | 4.0 |
| pfu_aug1.0_12564.1_32224.t1 | 7 | 2 | GCC2_GCC3 | 60 | 107 | 0.0 | 230.9 | 7.0e-17 | 2.1e-13 | 49.6 |
| pfu_aug1.0_12564.1_32224.t1 | 8 | 3 | NCD3G | 69 | 94 | 7.2e-10 | 38.4 | 2.5e-05 | 0.073 | 12.7 |
| pfu_aug1.0_12564.1_32224.t1 | 8 | 4 | NCD3G | 106 | 147 | 7.2e-10 | 38.4 | 0.0006 | 1.8 | 8.3 |
| pfu_aug1.0_12564.1_32224.t1 | 7 | 3 | GCC2_GCC3 | 114 | 160 | 0.0 | 230.9 | 1.9e-12 | 5.6e-09 | 35.4 |
| pfu_aug1.0_12564.1_32224.t1 | 8 | 5 | NCD3G | 157 | 201 | 7.2e-10 | 38.4 | 0.00016 | 0.46 | 10.2 |
| pfu_aug1.0_12564.1_32224.t1 | 7 | 4 | GCC2_GCC3 | 169 | 214 | 0.0 | 230.9 | 3.2e-11 | 9.5e-08 | 31.5 |
| pfu_aug1.0_12564.1_32224.t1 | 8 | 6 | NCD3G | 212 | 254 | 7.2e-10 | 38.4 | 1.1e-05 | 0.031 | 13.9 |
| pfu_aug1.0_12564.1_32224.t1 | 7 | 5 | GCC2_GCC3 | 221 | 268 | 0.0 | 230.9 | 2.6e-15 | 7.6e-12 | 44.6 |
| pfu_aug1.0_12564.1_32224.t1 | 8 | 7 | NCD3G | 268 | 310 | 7.2e-10 | 38.4 | 0.0014 | 4.2 | 7.1 |
| pfu_aug1.0_12564.1_32224.t1 | 7 | 6 | GCC2_GCC3 | 282 | 323 | 0.0 | 230.9 | 3.9e-13 | 1.2e-09 | 37.6 |
| pfu_aug1.0_12564.1_32224.t1 | 8 | 8 | NCD3G | 328 | 363 | 7.2e-10 | 38.4 | 8.8e-05 | 0.26 | 11.0 |
| pfu_aug1.0_12564.1_32224.t1 | 7 | 7 | GCC2_GCC3 | 333 | 371 | 0.0 | 230.9 | 6.8e-12 | 2.0e-08 | 33.6 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_12564.1_32224.t1 | gi|312087563|ref|XP_003145521.1| | hypothetical protein LOAG_09946 [Loa loa] | 1.0e-35 |
Transcript
| Transcript ID | pfu_aug1.0_12564.1_32224.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_12564.1_32224.t1 tgtactgtggcatgggtacgtactataacagcactagtgacacctgtcaatcatgtgataaggggcagtaccaggacaga gaggatggggcattgtcctgtacagcctgcccctcaggggaaacaactcagtgtacaggggccacctcactcggtgactg ctacactatctgtagtacaggatccttctataatagaacaagttctcagtgtgagttatgtggtataggctcataccaaa acagaacgggccgcctatcatgtataccatgtccttttggtaaaactacacgacaaaccggcagtgttaatgaaaatgtc tgctacgaggagtgtaaaagtggctatgagctgagtagtggtggagtgtgtaaagcttgtgacatcggttactacagaac ggagggtgttagtctgacttgtcaactgtgtcctgttggttatatcacctctggtacagctactacatctgttagtcagt gtgatgttgttgcctgtgtccctggacagtaccgcacaccacagaatacttgtcaggattgtcccttatcaacataccaa gacgaaaaatggcagacttcatgtaagccatgtgatacaagctacaggactgatcagacaggatccaccagcaaggctca atgtaaattaatttgccctgctggatataaagcggaccagtccaatactctgtgtgaaaaatgtcctgtaggccagtatc aacctcaggagaaccaagtgagttgtctaccctgtcctactggcactagtacactcacagatggcgctgcagctagtacg gattgtatagccttttgtccttcgggagaggaaaaagatgtaataggaaactgtaccaagtgtgacataggttactataa agacaataatgatggtgtgtttggtagctgtcagttatgtcccttacagtatataactacctccaaaggatctatatcag tcagtgactgtaatgtaggtaactgcacggctggtttttatacccagggttcccagtgtctgccatgtgacaaagggaca tatcaaccagacaaatggcagccctcttgtgtatcctgccctgtggatatgacaacaacagcccangggagccgtcaata ttactga |
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Protein
| Protein ID | pfu_aug1.0_12564.1_32224.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_12564.1_32224.t1 YCGMGTYYNSTSDTCQSCDKGQYQDREDGALSCTACPSGETTQCTGATSLGDCYTICSTGSFYNRTSSQCELCGIGSYQN RTGRLSCIPCPFGKTTRQTGSVNENVCYEECKSGYELSSGGVCKACDIGYYRTEGVSLTCQLCPVGYITSGTATTSVSQC DVVACVPGQYRTPQNTCQDCPLSTYQDEKWQTSCKPCDTSYRTDQTGSTSKAQCKLICPAGYKADQSNTLCEKCPVGQYQ PQENQVSCLPCPTGTSTLTDGAAASTDCIAFCPSGEEKDVIGNCTKCDIGYYKDNNDGVFGSCQLCPLQYITTSKGSISV SDCNVGNCTAGFYTQGSQCLPCDKGTYQPDKWQPSCVSCPVDMTTTAXGSRQYY |
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