Gene
| Gene Model ID | pfu_aug1.0_1261.1_15411 |
|---|---|
| Locus | scaffold1261.1 : 45674 ... 68072 : - |
| To GenomeBrowser | scaffold1261.1:45674..68072 |
| Genes list of scaffold | scaffold1261.1 |
| Synonym | pfu_aug2.0_344.1_14028 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_1261.1_15411.t1 | 2 | 1 | Macro | 674 | 710 | 8.6e-31 | 106.2 | 0.99 | 2900.0 | -1.9 |
| pfu_aug1.0_1261.1_15411.t1 | 2 | 2 | Macro | 1064 | 1179 | 8.6e-31 | 106.2 | 5.9e-34 | 1.7e-30 | 105.2 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_1261.1_15411.t1 | gi|260826818|ref|XP_002608362.1| | hypothetical protein BRAFLDRAFT_91321 [Branchiostoma floridae] | 0.0 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)| Libraries | EST count |
|---|---|
| >Embryonic/Larval stages | |
| mix | 1 |
| >Adult tissues | |
| maleGonad | 1 |
| mantle | 1 |
Transcript
| Transcript ID | pfu_aug1.0_1261.1_15411.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_1261.1_15411.t1 atgcctcttgcattcttcgtcaaacgtctattacactgagcttattcagcggtggtacagtgacggtatctgtaggtaaa tgtccggaggatattataccagaggaatggctcgatgatgcagatcttacctggtcaaagacaaatcataagagagaacc atcatcagttgatcacacatttagcaacaatggaagtttgtcatcgaatacccagtcagagcctgtcaatggccaggacc aatctcaacgggaatgtggctctcctgatgtgtttgattggggtacttcaggtctgactacttcatcagagagaaatgga gagacatcaagcttggtggacggtcccaatccaacaaatcaaagtgggcccgcttacttaccaaagaacactcattctgg tgattttactgtctatcaaaatgcagagactttcattataaggactgaggctttacaagagccaataaatgaagtacctc ctaaattgccagagaggaaacctcatccgaagtcctcccattcctcctcaacctctgcctctgctcctcaaggaggaaaa gtagagcctagtactgaggcctccttaagtaggccaggatttcctgtttctggtcaacaagtaggacactctgtaccacc aagggaggaagtgatcagttctctacagtatggaaaatataatgaaagttttgttactgctcaagaaaattttgactcta gccgaatatcagattgtttacctgaggcaccaggtgatagaggtcattttggcatgggtcaaggacctccggatcagcca ccatatccttttcagccacagcagtttggacctaatataatggtatgtccacctggaccaatgccccagccacctaattt tgcctccggacctacgccctcactacctaactaccattatggtatggggatgtatccaccctacggtcaagctcccctga ggccgccttttgagggagcttatcctactccacaagttgcaaaaagagtactggagaaagcaaaatctcataagatagga aaagctgaggtgcaaatttttgccttcaacccagagaaggagaacttctttgaggaaaaagtactgttggttactggcct gaaggacactacaaccactgaatgcctggagaattatttggaagctcgatgtgatgataatcttgaggaaatactgtatg gagatgaaggagggaaggcagttgtcgtttttgagaaagctccagatttcaagaaacttattacagctatcaaggggaaa tctctagagggtcaaaaactggaagcatccagggtgaagcgatgccactcagtttgtgtgtgtggaatcgatggcaacat tactgatgattgcttggaacttttcttcgagaacaagaggcgaagtggtggagggcaagttgaacgtctagatttacaat atgatataggaatctgtattgttttcttcaaaaattcttcagatgctgataacgtttggagaaatcatcgctctgttact gtgtcaggattaagtttacaagtgaagccttactacccctgtcttggattaccgagagagctggctcaggttactataga aaagggtagcacacctcaaataatgataaaagatctctcgtcatatgttgttcgttttttaagtacctctaaaagtttga agggaaaatttgatgaagatttaaaagggcacaatgccaaggtcatttggagtggtgctaaagatgcagacagcatggat atacattgtacatatcaagtaggtacaaaacttagcaaaaatacattagagaaatggaaggttgaagcagaaaaaattgt acgacaatttttagacgactttactgctaaaaaattgcagagttctagtgacgcttggaaaagtttgattgagtttctga ggactgtttctatagatgagcctgacaaggttggggtaatacttgaaaaagaacaatgttgtgttgtggtggttggttgg aaagataatgtagaaaaattgggcaaagtaattcagaataatatcaaaaccagagaggaaaaaattgtagcaaagaagtc acacgttacgaaatcatgttccttacagccacatcaagtaatgatactggaaaggcttcagtttcacaaaaatacagcca aatctttcacagatgtggaggtgaagatgaatgccagtgaaaagacagttacatttaccggccccaaatcggaactggat aaagctgttcttaaaatgcatgaaatactaaattcactaacgacaaagtctttcagtgtttctcaagtcttcatagaatt gctggacaaggaagaagcccagaaagcggtacatgacacgttgaagtcaaggaagctccagtcagcctgggttacaaagc caaaagagacttctgtcgaagtgtatggagtgaatccctctgagataaatcaagcaatgtcagctataagagatacctta ccagaaaagaactttgatcttaaagataatttacgcgagtttctaaggtcagaggaatggagaggctgcgttaaaaagct tacatctcattataacgggaaaatggcaatagtatccagtgatcaattggtatcatttgcagccattacagacatcttca attctgcatcagaagaaattcaaaaccaagtcgaagagtttactaggaagcactgctctgcctcagattttcttgcaacc aattcaggtagaatgaaatttattacaacacacatggagcaagagttgacaaggataacaaagaaatttgaatctggtaa tgtgaacatttcccctcggattatgggtagaggcaagactgggtttgttattaatggtgataagaatggcgttaaaaaag caaagaaggaattggaagatatggttaaaagtatcatggaagagaaacataaaatttccgagcctggatgtgtcagattc tttggttctgaggaaggaatcaaagccaggcaaaaggtagaatctgataacaaatgtatcataaagaatactaaagaaga ctctgaggagcaaactgtgaagagaggcggagaaaaatctgggaaaggtgctaattttaaacgtcctgaggaggtggcca gttgtagcagtggtggtatgaccatgaaagtcatggagggagatatgacacagttaagtgttgatggcattgtgaatgca gctaacaatgatttggatcattgcggaggactggctaaagtcatcagtgatgcaggaggaccttctatacagaaagagtg caataaatacatcaagaaatacggaaaggtgtcagatggagatgccatgtacagcagtccaggtcagttaccgtgtaagt ggctcattcatgctgtcggtccaagatggagcggaggtcatagaaatgaagaaatagacctacggaaagcaattacaaaa tgtctggagctagcctcagagaaaaatatgacattgttggccatacctgctctcagtgcaggaatatttggctaccctgt tgatcaggcaaccagtgtgatcatcggaactattgtattctattttaagacaaaggaaggaaaggagtcatctttgaaag aaatctacctatgtggagtggatgataagattatacgatcttttattcagtcattgcaaaacacgttaggctataagtca gttactgtgaagagaagagaaggggcatcatacaaggaagagagggattgtaagttttga |
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Protein
| Protein ID | pfu_aug1.0_1261.1_15411.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_1261.1_15411.t1 ASCILRQTSITLSLFSGGTVTVSVGKCPEDIIPEEWLDDADLTWSKTNHKREPSSVDHTFSNNGSLSSNTQSEPVNGQDQ SQRECGSPDVFDWGTSGLTTSSERNGETSSLVDGPNPTNQSGPAYLPKNTHSGDFTVYQNAETFIIRTEALQEPINEVPP KLPERKPHPKSSHSSSTSASAPQGGKVEPSTEASLSRPGFPVSGQQVGHSVPPREEVISSLQYGKYNESFVTAQENFDSS RISDCLPEAPGDRGHFGMGQGPPDQPPYPFQPQQFGPNIMVCPPGPMPQPPNFASGPTPSLPNYHYGMGMYPPYGQAPLR PPFEGAYPTPQVAKRVLEKAKSHKIGKAEVQIFAFNPEKENFFEEKVLLVTGLKDTTTTECLENYLEARCDDNLEEILYG DEGGKAVVVFEKAPDFKKLITAIKGKSLEGQKLEASRVKRCHSVCVCGIDGNITDDCLELFFENKRRSGGGQVERLDLQY DIGICIVFFKNSSDADNVWRNHRSVTVSGLSLQVKPYYPCLGLPRELAQVTIEKGSTPQIMIKDLSSYVVRFLSTSKSLK GKFDEDLKGHNAKVIWSGAKDADSMDIHCTYQVGTKLSKNTLEKWKVEAEKIVRQFLDDFTAKKLQSSSDAWKSLIEFLR TVSIDEPDKVGVILEKEQCCVVVVGWKDNVEKLGKVIQNNIKTREEKIVAKKSHVTKSCSLQPHQVMILERLQFHKNTAK SFTDVEVKMNASEKTVTFTGPKSELDKAVLKMHEILNSLTTKSFSVSQVFIELLDKEEAQKAVHDTLKSRKLQSAWVTKP KETSVEVYGVNPSEINQAMSAIRDTLPEKNFDLKDNLREFLRSEEWRGCVKKLTSHYNGKMAIVSSDQLVSFAAITDIFN SASEEIQNQVEEFTRKHCSASDFLATNSGRMKFITTHMEQELTRITKKFESGNVNISPRIMGRGKTGFVINGDKNGVKKA KKELEDMVKSIMEEKHKISEPGCVRFFGSEEGIKARQKVESDNKCIIKNTKEDSEEQTVKRGGEKSGKGANFKRPEEVAS CSSGGMTMKVMEGDMTQLSVDGIVNAANNDLDHCGGLAKVISDAGGPSIQKECNKYIKKYGKVSDGDAMYSSPGQLPCKW LIHAVGPRWSGGHRNEEIDLRKAITKCLELASEKNMTLLAIPALSAGIFGYPVDQATSVIIGTIVFYFKTKEGKESSLKE IYLCGVDDKIIRSFIQSLQNTLGYKSVTVKRREGASYKEERDCKF |
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