Gene
| Gene Model ID | pfu_aug1.0_12641.1_03260 |
|---|---|
| Locus | scaffold12641.1 : 5886 ... 13331 : + |
| To GenomeBrowser | scaffold12641.1:5886..13331 |
| Genes list of scaffold | scaffold12641.1 |
| Synonym | pfu_aug2.0_10002.1_09749 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_12641.1_03260.t1 | 1 | 1 | Acyl-CoA_dh_M | 1 | 49 | 4.1e-16 | 58.2 | 1.8e-19 | 9.1e-16 | 57.1 |
| pfu_aug1.0_12641.1_03260.t1 | 1 | 1 | Acyl-CoA_dh_1 | 106 | 215 | 1.4e-26 | 93.3 | 4.0e-30 | 2.0e-26 | 92.9 |
| pfu_aug1.0_12641.1_03260.t1 | 1 | 1 | Acyl-CoA_dh_2 | 121 | 215 | 2.5e-06 | 27.7 | 7.0e-10 | 3.4e-06 | 27.3 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_12641.1_03260.t1 | gi|321466669|gb|EFX77663.1| | hypothetical protein DAPPUDRAFT_53968 [Daphnia pulex] | 0.0 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)| Libraries | EST count |
|---|---|
| >Embryonic/Larval stages | |
| mix | 1 |
| >Adult tissues | |
Transcript
| Transcript ID | pfu_aug1.0_12641.1_03260.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_12641.1_03260.t1 atgagtgaggctaactcagggtcagatgttgtatctatgagattaaaagctgaaaagaaaggagatcattatgtattgaa tggtagtaagttctggattactaacggaccagatgccgatgtccttgtagtatatgctaagacagatctcagtgtagaac ctcaacatggtataactgcattccttatagagaagggaatgccagggttttcaacaggtcccaagttagataagcttggt atgagaggatctaataccagtgaacttatatttgaagactgtaaagtaccagagaagaatttactaggcccacgtaataa aggggtgtatgtaatgttcagtggtctggatatagagaggctagtactggcagcgggtccgctaggaatcatgcaggcat gttgtgatatggcattcaattatgcacatgttcgagaggcatttggacagaaaattggccagtttcagatgattcaatcc aaaatggcagatatgtatactttgatgaatgcagcgcgatcatatacttataatgtggccagggcactggatagaggaga gagacaaaataatgattgtgccgcagtaatactgtacacagcagaagctgctaccaaggtggcactggatgccatacaaa tactagagaataatccatgttcaaaatgtgacattttgtcaagcagatacgagcatgaaatatttgtacattttcatcat ttgctaaattcttcctcaatttcctttccataa |
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Protein
| Protein ID | pfu_aug1.0_12641.1_03260.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_12641.1_03260.t1 MSEANSGSDVVSMRLKAEKKGDHYVLNGSKFWITNGPDADVLVVYAKTDLSVEPQHGITAFLIEKGMPGFSTGPKLDKLG MRGSNTSELIFEDCKVPEKNLLGPRNKGVYVMFSGLDIERLVLAAGPLGIMQACCDMAFNYAHVREAFGQKIGQFQMIQS KMADMYTLMNAARSYTYNVARALDRGERQNNDCAAVILYTAEAATKVALDAIQILENNPCSKCDILSSRYEHEIFVHFHH LLNSSSISFP |
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