Gene
| Gene Model ID | pfu_aug1.0_126703.1_71737 |
|---|---|
| Locus | scaffold126703.1 : 1 ... 887 : - |
| To GenomeBrowser | scaffold126703.1:1..887 |
| Genes list of scaffold | scaffold126703.1 |
| Synonym | pfu_aug2.0_1294.1_14937 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_126703.1_71737.t1 | 1 | 1 | Ribosomal_S19e | 25 | 111 | 6.7e-33 | 113.0 | 1.0e-36 | 7.5e-33 | 112.9 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_126703.1_71737.t1 | gi|40643006|emb|CAD91429.1| | ribosomal protein S19 [Crassostrea gigas] | 3.0e-33 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)| Libraries | EST count |
|---|---|
| >Embryonic/Larval stages | |
| mix | 2 |
| egg-4cell | 2 |
| 8-16cell | 1 |
| egg-Dshape | 2 |
| trochophore | 2 |
| >Adult tissues | |
| Dshape | 1 |
| adductorMuscle | 1 |
| maleGonad | 1 |
| mantle | 2 |
| mantleEdge | 1 |
| mantlePallium | 1 |
| pearlSac | 1 |
Transcript
| Transcript ID | pfu_aug1.0_126703.1_71737.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_126703.1_71737.t1 atgggtctgttaatcgaacccaaaaacggacttgaaaaatccctggaaactttttcattatctacattttatcttgcagc ttctgtttgccgtcatttatacatcagatctcctgctggtgttggatcactgaccaagatttacggaggacgtcagagga acggcacagctcccagccacttcaagaggagcagccctaccgtagcacgtaaagtcctccagtctctagaaggactcaaa ctgatagagaaagacgctaacggaggacgccgtctgacacccgcaggacgtaaggatctggacaggatagcatcacagat caaggagaaaaccaacccaaggaagaagtga |
|
Protein
| Protein ID | pfu_aug1.0_126703.1_71737.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_126703.1_71737.t1 MGLLIEPKNGLEKSLETFSLSTFYLAASVCRHLYIRSPAGVGSLTKIYGGRQRNGTAPSHFKRSSPTVARKVLQSLEGLK LIEKDANGGRRLTPAGRKDLDRIASQIKEKTNPRKK |
|