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OIST Marine Genomics Unit since 2008

Gene
Gene Model IDpfu_aug1.0_1268.1_58418
Locus scaffold1268.1 : 1 ... 3505 : -
To GenomeBrowser scaffold1268.1:1..3505
Genes list of scaffold scaffold1268.1
Synonym pfu_aug2.0_421.1_04148

Manual annotation
Hmmer Search for Pfam
query Total ID Target From To Eval Score cEval iEval Score
pfu_aug1.0_1268.1_58418.t1 3 1 Lustrin_cystein 2 38 2.4e-17 62.7 8.8e-09 0.00013 21.9
pfu_aug1.0_1268.1_58418.t1 3 2 Lustrin_cystein 41 85 2.4e-17 62.7 3.8e-10 5.7e-06 26.3
pfu_aug1.0_1268.1_58418.t1 3 3 Lustrin_cystein 92 131 2.4e-17 62.7 3.1e-10 4.6e-06 26.6

Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)

Libraries EST count
>Embryonic/Larval stages
mix 1
>Adult tissues
mantle 1

Transcript
Transcript IDpfu_aug1.0_1268.1_58418.t1
Definition-
>pfu_aug1.0_1268.1_58418.t1
atggatggaacgggtaaacgaatcatctgtagcccacgtcgagtgcccaccaattgcccacgcggtaccacgtgtgtagg
tgggctggcagatcaagatggatcttgttgtagagatacaaatatctgtaagacgggaaaaccatttgtaacaaatggag
acgccccaccatgtcgtggtcccaatgcaatcagatgtccagctgcatttacatgtgaaggagatactaatccactatca
tctgtttgttgcccggtaagtacaggtgctacatgtcctgctggaaatccacttccgggaatattttgtgggcgtggtcc
aaacagaaaagattgtccatcaggctacttctgtaatatagatcccacagatcggtttgctgtgtgttgtaaag

Protein
Protein IDpfu_aug1.0_1268.1_58418.t1
Definition-
>pfu_aug1.0_1268.1_58418.t1
MDGTGKRIICSPRRVPTNCPRGTTCVGGLADQDGSCCRDTNICKTGKPFVTNGDAPPCRGPNAIRCPAAFTCEGDTNPLS
SVCCPVSTGATCPAGNPLPGIFCGRGPNRKDCPSGYFCNIDPTDRFAVCCK

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