Gene
| Gene Model ID | pfu_aug1.0_1268.1_58422 |
|---|---|
| Locus | scaffold1268.1 : 30283 ... 35205 : - |
| To GenomeBrowser | scaffold1268.1:30283..35205 |
| Genes list of scaffold | scaffold1268.1 |
| Synonym | NA |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_1268.1_58422.t1 | 2 | 1 | PIF1 | 9 | 106 | 6.1e-24 | 84.6 | 1.2e-19 | 3.7e-16 | 59.0 |
| pfu_aug1.0_1268.1_58422.t1 | 2 | 2 | PIF1 | 148 | 216 | 6.1e-24 | 84.6 | 2.5e-08 | 7.3e-05 | 21.8 |
| pfu_aug1.0_1268.1_58422.t1 | 1 | 1 | PHD | 739 | 794 | 5.7e-09 | 35.5 | 1.9e-12 | 5.7e-09 | 35.5 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_1268.1_58422.t1 | gi|5523990|gb|AAD44047.1|AF108138_1 | DNA helicase homolog [Homo sapiens] | 3.0e-38 |
Transcript
| Transcript ID | pfu_aug1.0_1268.1_58422.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_1268.1_58422.t1 atgtttgatggagatgggtatcttcaggtgaaggaaaggatcaaatcagctgatgtccttataattgatgaaattggaat gacatcgaaatccatatttgaaacagtagaaaaagtttgccgatgcattgtgatggacaacaataaacttttcggtggac tgcaggttatagcagctggagatttcaaacagttaccaccaatccccaatatcagatatgatgacccaggtcaatactgt tttgagagttccatttttagagatgtatttccacatcacattaatttacataaggtgatgagacaacatgagctgaatct tgttactgctgtgaaggagctgtgcaatggggagccatcaccagagacagaggagttccttcgtggtttgtcgcgagatc taccttctagtggagaatatatcacaaagattcatggtgacaattttgatgtaaattacaccaatcaaatggaactggat cagctacccggtgtagaatataagttcaaggccacagatgaaggaaaatcaactcttctggcaagctgtgctgcctcgaa aaatttgatactcaagtgtggagcacctgtaatcctcattcggaatattaaagaaggactatacaatgggatgattggga cagttcactctattgaaaacaacgaaccaataatttcttttgatggccgacttattcatatccagcagatgcgctttgat gtttttgataaaaggcataataagacattggcatgtagattacagtacccactcaaactagcgtttgctttaacagtgca tagggcacaaggtacaacgttacagaaagttgaggtagactgtttttccttttttgccgcaggacaacttggagtggcag ttgggcgggcagtgtcatcgaatggactgagaataatcaactacaatccccatgccgctagattgaaacatcctgatata gtcgaacaattttactgggaaacaagttgtcgtatattacaggacatgacttgttgtcataatgaccataagggtggcaa tgagtttgatgtacatgaatatgattgtgatgatgatgatcattatgatgatcaagagtgccactcaagggagtttttaa ttgatgttgagaacagaacatgtccttttccagttaaggaattcatacaactcaacaaagattcatcatttcttccaaga gacatggatcctttgcttcttgaaaacattgacacacatgcaaattatttgtattcaatattaaaacaagtattctcgtc tgcagattcagcctctacaacagatttctctttaatttaccgcaaactacatgatttctttggttccattcaacatttgc agtcattagataccatatccactgttctaaaacctcaaaagctgtcaactaaattaatgttatggatgacagaacaagaa attcaacagaaagctgaggaaataagaaagcaacaaactgaacaagaatgtgaaggtgatactccaacatcagaagtcat gcaaaacaaaataagatacatcgctggagcttgtatccataaaatgcgacaacgattgaggagcagttttgcctcaggaa aatctgtcagtacaagaagatttaaaatgcaacgtatgatgaagaaccttgtgctttcagaagaggagaccaaaagcaag acagaatacccagatacacttgctgaaattgattttaaacaatatacatctagaggacttttatatgtaaatgacgatgt gttcaagtttttcttaagtcttcattctgaagtgcagaaaaacctgagttcaagcagtctccatttgaaaatcagagata ttcatcttattataaggaaatgcctaggtacgaatgaagaactaataaagatgtggatggatctattcgaaatttgtgat gaaggtgaggatgatgagtacctcagtatggtcatggatctgtatgatatgacatctgatcactatgtgcggatatcact ctcagaaggtatccatgcattcaaggaaaaaattccaaaacgaaaaaaacaagcactgcggacaaaactgcaggccctat cagatacaagttcttcaagtaggaaacgcatactggaatcagaatctgcatcctgtagcaaaagttcaagaacttcattt caagaacctcaatcatgttatagcattgcagatgcaaacgaagatgaattcccatgcaaaatatgcaaaaagccttgctc tgatgaacctgaaactacagaagacgacagcatcgcatgtgacaaatgcaaccagtggcatcactttaaatgtgtaggac tgaagggtgatgagaatttcattcagaaaaaatcatctcgttgggtatgtgatgcatgtaaaggacagcaaactaagaaa ggaaaaggaaaagggaaagggaaaggaaagaggggtacaacacactaa |
|
Protein
| Protein ID | pfu_aug1.0_1268.1_58422.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_1268.1_58422.t1 MFDGDGYLQVKERIKSADVLIIDEIGMTSKSIFETVEKVCRCIVMDNNKLFGGLQVIAAGDFKQLPPIPNIRYDDPGQYC FESSIFRDVFPHHINLHKVMRQHELNLVTAVKELCNGEPSPETEEFLRGLSRDLPSSGEYITKIHGDNFDVNYTNQMELD QLPGVEYKFKATDEGKSTLLASCAASKNLILKCGAPVILIRNIKEGLYNGMIGTVHSIENNEPIISFDGRLIHIQQMRFD VFDKRHNKTLACRLQYPLKLAFALTVHRAQGTTLQKVEVDCFSFFAAGQLGVAVGRAVSSNGLRIINYNPHAARLKHPDI VEQFYWETSCRILQDMTCCHNDHKGGNEFDVHEYDCDDDDHYDDQECHSREFLIDVENRTCPFPVKEFIQLNKDSSFLPR DMDPLLLENIDTHANYLYSILKQVFSSADSASTTDFSLIYRKLHDFFGSIQHLQSLDTISTVLKPQKLSTKLMLWMTEQE IQQKAEEIRKQQTEQECEGDTPTSEVMQNKIRYIAGACIHKMRQRLRSSFASGKSVSTRRFKMQRMMKNLVLSEEETKSK TEYPDTLAEIDFKQYTSRGLLYVNDDVFKFFLSLHSEVQKNLSSSSLHLKIRDIHLIIRKCLGTNEELIKMWMDLFEICD EGEDDEYLSMVMDLYDMTSDHYVRISLSEGIHAFKEKIPKRKKQALRTKLQALSDTSSSSRKRILESESASCSKSSRTSF QEPQSCYSIADANEDEFPCKICKKPCSDEPETTEDDSIACDKCNQWHHFKCVGLKGDENFIQKKSSRWVCDACKGQQTKK GKGKGKGKGKRGTTH |
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