Gene
| Gene Model ID | pfu_aug1.0_12725.1_03268 |
|---|---|
| Locus | scaffold12725.1 : 1 ... 24660 : + |
| To GenomeBrowser | scaffold12725.1:1..24660 |
| Genes list of scaffold | scaffold12725.1 |
| Synonym | pfu_aug2.0_1475.1_18352 |
Manual annotation
| Study field | Biomineralization |
|---|---|
| Gene name | Pfu-SCO-spondin-like |
| Description | NCBI blastx best hit to XP_002942623.1. This gene contains two trypsin inhibitor like cysteine rich domains and four thrombospondin type 1 domains. |
| mRNA evidence |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_12725.1_03268.t1 | 2 | 1 | TIL | 440 | 500 | 8.6e-08 | 32.1 | 1.8e-08 | 6.8e-05 | 22.9 |
| pfu_aug1.0_12725.1_03268.t1 | 5 | 1 | TSP_1 | 545 | 588 | 1.6e-24 | 85.7 | 4.9e-11 | 1.8e-07 | 31.1 |
| pfu_aug1.0_12725.1_03268.t1 | 5 | 2 | TSP_1 | 643 | 689 | 1.6e-24 | 85.7 | 1.8e-09 | 6.8e-06 | 26.1 |
| pfu_aug1.0_12725.1_03268.t1 | 5 | 3 | TSP_1 | 698 | 744 | 1.6e-24 | 85.7 | 3.9e-09 | 1.4e-05 | 25.0 |
| pfu_aug1.0_12725.1_03268.t1 | 5 | 4 | TSP_1 | 752 | 797 | 1.6e-24 | 85.7 | 3.5e-11 | 1.3e-07 | 31.6 |
| pfu_aug1.0_12725.1_03268.t1 | 2 | 2 | TIL | 799 | 850 | 8.6e-08 | 32.1 | 6.7e-09 | 2.5e-05 | 24.3 |
| pfu_aug1.0_12725.1_03268.t1 | 5 | 5 | TSP_1 | 804 | 816 | 1.6e-24 | 85.7 | 0.17 | 620.0 | 0.6 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_12725.1_03268.t1 | gi|190609996|tpe|CAL69034.1| | TPA: SCO-spondin protein [Strongylocentrotus purpuratus] | 4.0e-33 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)| Libraries | EST count |
|---|---|
| >Embryonic/Larval stages | |
| mix | 1 |
| >Adult tissues | |
| mantle | 1 |
| mantleEdge | 1 |
| mantlePallium | 1 |
| pearlSac | 1 |
Transcript
| Transcript ID | pfu_aug1.0_12725.1_03268.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_12725.1_03268.t1 gcaccaccaccatccacaacagccactccaagtgcaccaccaccatccacaacagccacaccaagtgcaccaccaccatc cacaacagccacaccaagtgcaccaccaccatccacaacagccacgccaagtgcaccaccaccatccacaacagccacgc caagtattccaccaccttcatcaactataagtatttcaacgtcaaccattacaggtactaccacactgaggattactact ccctcattctcgacctcttctgcaccaacgtcttcaccgtcgcccacttcgccacagtcaccttctacaactgtctcagt gacgggcacaacgttgtcgtcaaccatttctgtaacgccaacaccttcacaaacgacagccgtcacgcattgtggctaca gattttctgtaaatctgtatcaccttgcgtaaagaagaccttgaattcgcttacgtcggataacctcatcatgagcccag gtgttgctgtaactgattcattggccggatctgagaatccttacattggtgacactcaaggcggtctcaataacctcgtg tacacgatactggcagttgatgatgttgcagacatctatgacgtccaacttaccaccaagaatgtccgaaagatcacagt cagcgtatacgacagcaatggagacaatgtcaagacaacaagtgtcacaccaaccaatccaggtcagccagagactttca gcgttcagccgactgagccaggaacaaccatacaaatcatacccgtaccaataccatctctacaacctcctgtaatttct gacttgtcggtagaggcctgtgtccatattccatcaacaacaccattcccaagtacaacagtggcaacgacaaccatggc aacaactgttacaccatgtgtatccaaaatgattagcgtggccgaaaatccaaatgctgttaagttccctcaaccttcct caactgatcctagtacggcaccagctgatgtactgtccccatctggctggaaaccagccaacaatgacaatactccagtt ttgacagctgaacttcaagacgaagacgatgtggcccaaatcaaggaagtcaaagttgacgtgcaaaatgtacagagcat caatgcagttctaaaggacaaagatggaaacgtagtggaagaaatcgagggtaaccctgttaatggagaagtgaccttca attttgatagtgccgagggaatgaccatagaattccagatcacacccgtagatggagagcaacctgtcctaagtaatctg gaaattgaagcttgtattgaaccaagagccacaccaatctgtacggacggaaaggtctggatggactgctccaaccccaa tatatctatctgccctattgactgcataggctacagaatgaactcagaatgtaccgaaccagatgcttgccaaccagcct gttattgtccagttggtcaagttgaaaatgaggaaggcgtttgtatagatatggaagactgcccatgctatagcgagaat ggtgaaattgttgtagagggtgccacttggattccagatggcaataaatgtgaagtatgcaaatgtgaatacggacaaac tgtttgtgatccggttaacgactgttgtgactggagtgactggggacattggggagtatgtagcacgacatgtggcgagg gaactcagaacagatacaggacccttaagactggaaatagcacatcatgtggttcagaccaggagacagctacttgcaat aacccagagtctttggaatgtgtagattgtgtcaaggatggaataacataccaacggggtgaactaataccttcaatgag cactcaatgtcaagactgtgcttgtatgggaaataatgagattcattgcatgaattctacatcaaagaagattgacggaa actgggctgcatggggagaatggtcaacttgtacaacaaactgcacaggtggtatccgacataggacaagaagttgtacc gatcctctcccattatgcaacggcctgtcatgcccaggggataatgaagaaacagaatcctgcaaccaaggcatctcatg ctgcactgttaagcaatgggagtcatggactacttgttctcaaacttgtgatggaggcaagcagttccgtatcagaggct atgaagatcctaacgatcaattaatatgtgacgtagatgttaaggaggaaagggactgtaacacagatccatgtatcacc atctgtaatgtaaccacttggtcagactggacaccatgtacacaaacatgtggccaaggaactaagacacgtgatcgaag cattactggtgaagtagttgcagattgtccagataatctttttgagacagacacatgttttgctggagagtgtgtatgtg ccgacaacgagaaatggtccaatggttctgaatgcagaaggacatgtgctaacagatacgacaatcttggatattgcaat gaaataggatgtgtatgtgaaaacggatactactatgatgataatggaaattgtgtcaacgaatccatttgtgacatttg tacagtcaacggcgtaaactatacatccggagaaacgttcccgaacccgattaatcaatgtgaaatttgtgaatgtattg acggacaagagtcgtgctcaagatactgttctataccaacatgtgctgaggatgaagaactgtcatacaatcctgaagac acgcccgactcctgttgtcctgtgtgtaaaccaaaaccaaagg |
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Protein
| Protein ID | pfu_aug1.0_12725.1_03268.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_12725.1_03268.t1 TTTIHNSHSKCTTTIHNSHTKCTTTIHNSHTKCTTTIHNSHAKCTTTIHNSHAKYSTTFINYKYFNVNHYRYYHTEDYYS LILDLFCTNVFTVAHFATVTFYNCLSDGHNVVVNHFCNANTFTNDSRHALWLQIFCKSVSPCVKKTLNSLTSDNLIMSPG VAVTDSLAGSENPYIGDTQGGLNNLVYTILAVDDVADIYDVQLTTKNVRKITVSVYDSNGDNVKTTSVTPTNPGQPETFS VQPTEPGTTIQIIPVPIPSLQPPVISDLSVEACVHIPSTTPFPSTTVATTTMATTVTPCVSKMISVAENPNAVKFPQPSS TDPSTAPADVLSPSGWKPANNDNTPVLTAELQDEDDVAQIKEVKVDVQNVQSINAVLKDKDGNVVEEIEGNPVNGEVTFN FDSAEGMTIEFQITPVDGEQPVLSNLEIEACIEPRATPICTDGKVWMDCSNPNISICPIDCIGYRMNSECTEPDACQPAC YCPVGQVENEEGVCIDMEDCPCYSENGEIVVEGATWIPDGNKCEVCKCEYGQTVCDPVNDCCDWSDWGHWGVCSTTCGEG TQNRYRTLKTGNSTSCGSDQETATCNNPESLECVDCVKDGITYQRGELIPSMSTQCQDCACMGNNEIHCMNSTSKKIDGN WAAWGEWSTCTTNCTGGIRHRTRSCTDPLPLCNGLSCPGDNEETESCNQGISCCTVKQWESWTTCSQTCDGGKQFRIRGY EDPNDQLICDVDVKEERDCNTDPCITICNVTTWSDWTPCTQTCGQGTKTRDRSITGEVVADCPDNLFETDTCFAGECVCA DNEKWSNGSECRRTCANRYDNLGYCNEIGCVCENGYYYDDNGNCVNESICDICTVNGVNYTSGETFPNPINQCEICECID GQESCSRYCSIPTCAEDEELSYNPEDTPDSCCPVCKPKPK |
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