Gene
| Gene Model ID | pfu_aug1.0_12777.1_17914 |
|---|---|
| Locus | scaffold12777.1 : 6505 ... 14195 : - |
| To GenomeBrowser | scaffold12777.1:6505..14195 |
| Genes list of scaffold | scaffold12777.1 |
| Synonym | pfu_aug2.0_267.1_23777 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_12777.1_17914.t1 | 2 | 1 | Alpha-2-MRAP_N | 22 | 102 | 2.8e-26 | 91.5 | 1.8e-29 | 4.4e-26 | 90.9 |
| pfu_aug1.0_12777.1_17914.t1 | 2 | 1 | Alpha-2-MRAP_C | 30 | 66 | 3.5e-14 | 53.1 | 0.0099 | 25.0 | 4.6 |
| pfu_aug1.0_12777.1_17914.t1 | 2 | 2 | Alpha-2-MRAP_C | 123 | 171 | 3.5e-14 | 53.1 | 3.7e-17 | 9.0e-14 | 51.8 |
| pfu_aug1.0_12777.1_17914.t1 | 2 | 2 | Alpha-2-MRAP_N | 124 | 164 | 2.8e-26 | 91.5 | 0.0028 | 6.8 | 6.3 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_12777.1_17914.t1 | gi|321473150|gb|EFX84118.1| | hypothetical protein DAPPUDRAFT_301398 [Daphnia pulex] | 1.0e-29 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)| Libraries | EST count |
|---|---|
| >Embryonic/Larval stages | |
| mix | 1 |
| egg-Dshape | 1 |
| >Adult tissues | |
Transcript
| Transcript ID | pfu_aug1.0_12777.1_17914.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_12777.1_17914.t1 atgaaaactttagcttttattctttttgtaaatctgtttatcttgcttgaatgtggtaaatatgacaagttttcaaatac agagagacctttcaggacaataaaagtaaatcaaatttgggaaaaggctcaaaagaaattatcaggtcctaagctggctg atctatatgccgacttgactgttcaagataaagttgaacgacagctgaaaaaattgaaagctgaagatctggataaagat ggcttgaaggaagcagaagtaagacaaagaatgcttgaacttgtacacaagtatggcctacaggactatatatccatgcc acattttgatggtagaagtaatgaaatacccgaggattcccatacagatatgatacgagacaaaaaactgaagaaattat ggaaatctgctgaatatgccggattttcagaaaaagaattagaggaattaaaagaagaattttggcatcaacaaatgaag atagatgagtacaatacattgagggatgatataatatccatgggaggtaagaaaactaaacttggtaagctgttgtaa |
|
Protein
| Protein ID | pfu_aug1.0_12777.1_17914.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_12777.1_17914.t1 MKTLAFILFVNLFILLECGKYDKFSNTERPFRTIKVNQIWEKAQKKLSGPKLADLYADLTVQDKVERQLKKLKAEDLDKD GLKEAEVRQRMLELVHKYGLQDYISMPHFDGRSNEIPEDSHTDMIRDKKLKKLWKSAEYAGFSEKELEELKEEFWHQQMK IDEYNTLRDDIISMGGKKTKLGKLL |
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