Gene
| Gene Model ID | pfu_aug1.0_1280.1_22516 |
|---|---|
| Locus | scaffold1280.1 : 2526 ... 8165 : + |
| To GenomeBrowser | scaffold1280.1:2526..8165 |
| Genes list of scaffold | scaffold1280.1 |
| Synonym | pfu_aug2.0_548.1_27526 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_1280.1_22516.t1 | 1 | 1 | RVT_1 | 10 | 66 | 5.9e-11 | 42.1 | 4.2e-14 | 1.2e-10 | 41.0 |
| pfu_aug1.0_1280.1_22516.t1 | 1 | 1 | rve | 430 | 542 | 3.5e-22 | 78.7 | 5.5e-25 | 1.6e-21 | 76.5 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_1280.1_22516.t1 | gi|308492221|ref|XP_003108301.1| | hypothetical protein CRE_10000 [Caenorhabditis remanei] | 0.0 |
Transcript
| Transcript ID | pfu_aug1.0_1280.1_22516.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_1280.1_22516.t1 atgagcgttgttctaaacggatatgaacagttttgtacagcttatttagacgacgttatcatctggtcacaaacagaaag tcaacaccgtgaacatattcaagccgtgtttgaccgactcaggcaacacaatttaaagttgaaacttaagaaatgttcat ttttcaaaacagaaacaaactatcttggatttaccattgacgaggatgctgaaccattaatcgcacttacgagaaaatac gcgcgatttcactgggaccaaggctgccagaaagcctttgaatttttgaaagagagtcttaccgtcgtgccattattagc atatccggatgtaaaacttccgtacacattatattgtgacgcatcagatagcactgtaggtgcagtattatgtcaaaaga catgcccagatcaaaacgatattccgaacatggtaaatgaaaaaccattgtattatcttagccacaaattatcggataca caaacacgttggtctacaatcgagaaagagatgtacgctattcactacgcgttacagaaattataccactatctgcataa cagccaatttgtcataaaaactgaccacgcgccattgcgctacgttttagattcacctatgaagaataaaaagattcagc tttgggcactcaatctatccgcttacaattgcacggtcgagtacattaaaagtaaggaaaacacctgtgccgatttattg tcgcgaatgcccgaaggcgatactaaatcacatccaaatgacagtaaggacggtaatgaaccggaccttaacgacaatac gtatgagatcagtactttaaattcaaataggtttaacccaagggaccatgcaagtacaactacaaaagaccctgacattg cacttccggacatttcggacttacaaaaatttagtttagctgaagaacaggaaaaggacgacattgttcgtaaactccgt actcagttgaaaaataacgacgcatcttccacggaccaaaaacgttatcttttggttgacgacgttttgtattatttgac aaacccagacgacgaaccactacttcgactttacgtcccaacacacttacaaaagtttgtattaaaacagtatcacgacg atcttggacgttatggagtagacaggactttctataacatcagaaatcgctattactggcctagactgttccccatcata aacgagtacatttcaagctgtgttacttgtcaaacgagaaatctatcgtccgtacgtccaccgttagtggagacagacat acccccttacccatgggcaaaggctggacttgacctctcgggaccttacccgacatctctgtctggaaataagtacatca ttgcatttatagatttatattctggattccccgaggcatttcctgtcaaagataaatctgcggataatatcacccatctt ttattacacgaaatcttcccaagatacggttcattacttcagttggtaacagacaatgggacagagaatgtaaatagaaa ggtcagagaaactttacaggcgttaaacatcaatcaaattactacctccttttaccaccctcaaggtaacgccaaggtcg agcgatttcatcgtacactccatgatattatggcaaaacaaatgcaatcagatcaatttgtatgggatttgtatttacca agcgctttagccgctttcagattaagtataagtgactcgaccaagttttcgccctttttccttttgtacaatcgggatgt agttcttccccttgacacgatactcaaacccagagaaaaatatacaggtgatgaccaacaccagatagcattacaaatgc agcataaaacttttatggctgtacatagaaatctcagaagggctaaaaaggtccaagctcgatatgcaaatagaaattct aagcaggtcaattttcagataaatgaccccgtctatctgaaaaatcatgtcagaaagaacaaattcgatgttagatggca accatactatcgtataatagaccagacatcccccgttagcttcgtaattaaaaatcagttggacggaaccactacgaagg cacatgccgagcatttacgacttgcaaaacttgatgaatgggacatccctaaaaatgacgaaggtcgacctgtaagacgg gcacgggagggatcctctgatgacgaagacgatatcccccttatggaattggcaaaacgatacagagaaaagaaaggacg acttaaacaaaacccagcagataatactgaaacaagtaacgtaactttagacaggattaatgacacaagtagggatatgg aaattgacgagtgtagggtttgtcgtcgaggtgttaagggcaactctaccaaacagttaaccggcacaggaaatgatatt gatatcctggaactaaaggcactcatgcgcaaggaagaatctgtagctccatcggctccacagaaggacggaccgacgaa caacgtaaggccggtgtatcccgtccttgaactcgcaaacatttcaagttag |
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Protein
| Protein ID | pfu_aug1.0_1280.1_22516.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_1280.1_22516.t1 MSVVLNGYEQFCTAYLDDVIIWSQTESQHREHIQAVFDRLRQHNLKLKLKKCSFFKTETNYLGFTIDEDAEPLIALTRKY ARFHWDQGCQKAFEFLKESLTVVPLLAYPDVKLPYTLYCDASDSTVGAVLCQKTCPDQNDIPNMVNEKPLYYLSHKLSDT QTRWSTIEKEMYAIHYALQKLYHYLHNSQFVIKTDHAPLRYVLDSPMKNKKIQLWALNLSAYNCTVEYIKSKENTCADLL SRMPEGDTKSHPNDSKDGNEPDLNDNTYEISTLNSNRFNPRDHASTTTKDPDIALPDISDLQKFSLAEEQEKDDIVRKLR TQLKNNDASSTDQKRYLLVDDVLYYLTNPDDEPLLRLYVPTHLQKFVLKQYHDDLGRYGVDRTFYNIRNRYYWPRLFPII NEYISSCVTCQTRNLSSVRPPLVETDIPPYPWAKAGLDLSGPYPTSLSGNKYIIAFIDLYSGFPEAFPVKDKSADNITHL LLHEIFPRYGSLLQLVTDNGTENVNRKVRETLQALNINQITTSFYHPQGNAKVERFHRTLHDIMAKQMQSDQFVWDLYLP SALAAFRLSISDSTKFSPFFLLYNRDVVLPLDTILKPREKYTGDDQHQIALQMQHKTFMAVHRNLRRAKKVQARYANRNS KQVNFQINDPVYLKNHVRKNKFDVRWQPYYRIIDQTSPVSFVIKNQLDGTTTKAHAEHLRLAKLDEWDIPKNDEGRPVRR AREGSSDDEDDIPLMELAKRYREKKGRLKQNPADNTETSNVTLDRINDTSRDMEIDECRVCRRGVKGNSTKQLTGTGNDI DILELKALMRKEESVAPSAPQKDGPTNNVRPVYPVLELANISS |
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