Gene
| Gene Model ID | pfu_aug1.0_1282.1_07860 |
|---|---|
| Locus | scaffold1282.1 : 8548 ... 27495 : - |
| To GenomeBrowser | scaffold1282.1:8548..27495 |
| Genes list of scaffold | scaffold1282.1 |
| Synonym | pfu_aug2.0_762.1_07856 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_1282.1_07860.t1 | 1 | 1 | PG_binding_1 | 18 | 47 | 6.7e-07 | 29.1 | 1.6e-09 | 2.2e-06 | 27.5 |
| pfu_aug1.0_1282.1_07860.t1 | 1 | 1 | Peptidase_M10 | 78 | 231 | 0.0 | 172.9 | 0.0 | 0.0 | 171.8 |
| pfu_aug1.0_1282.1_07860.t1 | 4 | 1 | Hemopexin | 264 | 294 | 3.0e-30 | 103.6 | 0.00017 | 0.23 | 11.2 |
| pfu_aug1.0_1282.1_07860.t1 | 4 | 2 | Hemopexin | 311 | 347 | 3.0e-30 | 103.6 | 7.4e-10 | 9.9e-07 | 28.3 |
| pfu_aug1.0_1282.1_07860.t1 | 4 | 3 | Hemopexin | 354 | 403 | 3.0e-30 | 103.6 | 2.9e-11 | 3.9e-08 | 32.8 |
| pfu_aug1.0_1282.1_07860.t1 | 4 | 4 | Hemopexin | 406 | 448 | 3.0e-30 | 103.6 | 1.7e-10 | 2.4e-07 | 30.3 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_1282.1_07860.t1 | gi|260820268|ref|XP_002605457.1| | hypothetical protein BRAFLDRAFT_120668 [Branchiostoma floridae] | 0.0 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)| Libraries | EST count |
|---|---|
| >Embryonic/Larval stages | |
| mix | 3 |
| egg-Dshape | 1 |
| >Adult tissues | |
Transcript
| Transcript ID | pfu_aug1.0_1282.1_07860.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_1282.1_07860.t1 atggagtcacgccctccattcgagacggaagaggagatccttaacagtgatgcatacagaaaagctgctataaggaagtt tcagagttttgctggtcttgatgccacaggggtattaaatgacgccaccatagacgccatgaggaaacctcgatgtggag tcaaagacatacagacacccgaggaagtagcacaggcagacagaccgttaaacttctacgcgccaggatataaatggcca agtaaagcaataacatggagagcatcacgacccaccagaaaactctccgaagctacacaaaggtatgcctttgagaatgc tttcaagtactggtctgacgtcactcccctgaagtttgagtacacttacggtgaaccggatattgatatccagtttgcgg tgcgtgatcatggtgacggacgatacaatgcttttgatggaaaaggtggtgttcttgcgcatgcctactacccaaccaat ggggacacacatttcgatgacgaagagagctgggtattcaggaaaaatgaaggtactgatatcgagacagtggccgccca tgagtttggacacgcccttggacttggacactcaagtgagcccaaatctctgatggccccattctaccaaggatttaacc ctgacttcaaacttcacgaggacgacattaggggaatacagtcactttacggtaccaaggatggggaaatcacaactact catgctccaactaccacttcctccggaaatgacgtaaccccagtgtcaccaactgtgtgcaacatgaaattcgatgctat gaccttaggaccggatgggtttacctatgtattcagaaacaagactgtttaccgccttaataataccggggtagtagcca ccatgctttcccgccatgtataccccggggctcctagatctccaggggctgctgtgtacattgacaacacaaagaagact ttcatatttaaaggacgtcgtatatggaaatacacaggattccagatggacgctgactatcctatcaccattactgactc taactatcctaccagaatccatgctgcaatagcattcaaaagcaccgggagtacagcacaacaaatatacctcttcaacg ataactctttttgggagtttaatccgaacacaaacagtatagtgccaggatttcctctgaccatttcgggtttctggagg ggaatccccgctgggatagaggcagccatacaatggacagatggcgacatctacttcttcaagggagataagtatagacg ctttgacgcagaccgtcgtacattgacgaagggatacccaaaagacaaggcccctgcctggttaggaagtgtctgtgata aacaacatggaattatggacaaagccaatggcaccagacgatattccctcctcgacacaatgagggaacagacgtacgga tggtatccgtccgtcaaagacgtgtacaaggacagacggatgggagctcccaacccttatcagatcgaagcaatgtataa gtttcaaaaaagtaaatactacgaacctccacacccaccgacgccaagaccaccaaatgcgttccgtccgacgccaacac ctcaaaagcgtccaatgtccaccatgtccagtaaaagtcgcagcagcggaaaagactcatctttacaagttcgcgccaaa agcgcccctatatatgactttaaacctgtacctcgattacaaattcccacccctcatcaatgctgggctatgtcaacaga tgagaccccatacggagtagttgagcccacgccaacccctccgcctgaatggcccagtcctaaaccaccattctcttcac ccacaccctctgtgtcgttatcgctgcacggcgaacaaggtcaggatacaaggagggaccgtatacaaagtgctgtcatc agaagggaacgtcctacacctcccccgagatctgttagatccgccggaagtaatagaaaaccactacaggaaacggaaag gtcgtgtcccagccgaattatgagacccagttgtccaacgccgtccgtgaaaagggtagagactccagttcctgatgaag ttcgctccccttctccagacccttatgatgcagagctgaagaaatatggatggagaatggaggtacatggtgatccttac aagatcaaaccaatcaccaagcgcctgacatactacgtcacttgccaggaaccggaaattgaatcagaaggacccaaagt tcacatggagaatggggaaactttcttctacaacactataccacggaggccagcttgttttgcgatccataaagaatgga tttctgaaactattcacgccaaacgaatggaactacaaaaacgggagggcataaagcacagatggaagaactttgccttt gtttattag |
|
Protein
| Protein ID | pfu_aug1.0_1282.1_07860.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_1282.1_07860.t1 MESRPPFETEEEILNSDAYRKAAIRKFQSFAGLDATGVLNDATIDAMRKPRCGVKDIQTPEEVAQADRPLNFYAPGYKWP SKAITWRASRPTRKLSEATQRYAFENAFKYWSDVTPLKFEYTYGEPDIDIQFAVRDHGDGRYNAFDGKGGVLAHAYYPTN GDTHFDDEESWVFRKNEGTDIETVAAHEFGHALGLGHSSEPKSLMAPFYQGFNPDFKLHEDDIRGIQSLYGTKDGEITTT HAPTTTSSGNDVTPVSPTVCNMKFDAMTLGPDGFTYVFRNKTVYRLNNTGVVATMLSRHVYPGAPRSPGAAVYIDNTKKT FIFKGRRIWKYTGFQMDADYPITITDSNYPTRIHAAIAFKSTGSTAQQIYLFNDNSFWEFNPNTNSIVPGFPLTISGFWR GIPAGIEAAIQWTDGDIYFFKGDKYRRFDADRRTLTKGYPKDKAPAWLGSVCDKQHGIMDKANGTRRYSLLDTMREQTYG WYPSVKDVYKDRRMGAPNPYQIEAMYKFQKSKYYEPPHPPTPRPPNAFRPTPTPQKRPMSTMSSKSRSSGKDSSLQVRAK SAPIYDFKPVPRLQIPTPHQCWAMSTDETPYGVVEPTPTPPPEWPSPKPPFSSPTPSVSLSLHGEQGQDTRRDRIQSAVI RRERPTPPPRSVRSAGSNRKPLQETERSCPSRIMRPSCPTPSVKRVETPVPDEVRSPSPDPYDAELKKYGWRMEVHGDPY KIKPITKRLTYYVTCQEPEIESEGPKVHMENGETFFYNTIPRRPACFAIHKEWISETIHAKRMELQKREGIKHRWKNFAF VY |
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