Gene
| Gene Model ID | pfu_aug1.0_1282.1_07863 |
|---|---|
| Locus | scaffold1282.1 : 42736 ... 51775 : - |
| To GenomeBrowser | scaffold1282.1:42736..51775 |
| Genes list of scaffold | scaffold1282.1 |
| Synonym | pfu_aug2.0_762.1_07853 |
Manual annotation
| Study field | Biomineralization |
|---|---|
| Gene name | matrilin like protein |
| Description | matrilin like protein, best hit to BLAST AAZ80784.1 |
| mRNA evidence |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_1282.1_07863.t1 | 2 | 1 | VWA | 76 | 245 | 4.2039e-45 | 153.8 | 6.3e-31 | 4.7e-27 | 94.8 |
| pfu_aug1.0_1282.1_07863.t1 | 2 | 1 | VWA_2 | 76 | 248 | 3.0e-09 | 37.2 | 3.5e-07 | 0.0026 | 17.9 |
| pfu_aug1.0_1282.1_07863.t1 | 2 | 2 | VWA | 275 | 440 | 4.2039e-45 | 153.8 | 4.2e-20 | 3.1e-16 | 59.6 |
| pfu_aug1.0_1282.1_07863.t1 | 2 | 2 | VWA_2 | 289 | 425 | 3.0e-09 | 37.2 | 5.9e-07 | 0.0044 | 17.1 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_1282.1_07863.t1 | gi|73695956|gb|AAZ80784.1| | matrilin [Biomphalaria glabrata] | 5.0e-24 |
Transcript
| Transcript ID | pfu_aug1.0_1282.1_07863.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_1282.1_07863.t1 atgtattgttcggcgtttaatatgtacaagcatcactgtaacaacaccaaagccacccccgacgactacaacgacgacaa ctacgacgactaccacaacgacaactacgacaccggcaccaaggaccgatcctttgacggaaatgctaccactacaacca cacctaccaccaccactacgtcactccttgaagtcgccaggcgagtatgtgctaatggcgtgagcgacatcgtctttgcg tttgattcctctaccacagtttcggatcgtgacttccggaatcagatacaatttgctaaagacatcacaaataatttgaa tatagaacctaatggaaccagggtaggtgcgatcctctattccgatcaaattgtcaacatcatgaatatgaatgaacata acgatcgagatgacattacatcaacgctggataaaaccgtacgatcagccggaaggaatagactcgatttggctttgaag tatattagaaccgtaagcttccggcgaggattagctagagagcgtgcggcacaactggcgatcgtttttacatccaaacc gaccatgtatattcataatacaaaaaaacaatcccataggacaagagaatccggaattgcagtcattccaataagtatag gaagggtcacagaagatgagatgattgctatttccggaacaacagattcatctaaatatttcaagctttcatctactgat gagttgaattctgtcttggccgagctttcaattgaagcttgcagagttcccgaacctgtgatatctatatcggatcaatc ctgtggttctaggcaagaagcagatatcatgtttattctggatagtgtaaatgccggaagaaaaaataccaaaaaggttc tagcatttatgaaggacttggttgatgaacttgacgttgacccgaaaaagatccaggtaggcctaatgtcggcagagtgt caagacgacaacacgggattccagctgaactccaatactaacaacgaggaagtgacgaaagctctatccaaggtcaaagg agtcgatttatctggtatgctgaagcaaatgaggagaggagcttacagccataacaaaggagggcggaaggaagcgaaaa agatcgccattttgattgttgacggaagtctggatgagccaatcagaacgctgacagaagcacagcgtgctcgtatccat ggagtcgaggtgatagtgatacaagtaggtcaggaggagccgcaggaggagcttctcatgatgtgtgatgcgcctaaaaa acagcacttcttcaaagtcccacattataaccaactaccaggcatgaaggacagactgtggcaagctatctgtgacgaat tatga |
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Protein
| Protein ID | pfu_aug1.0_1282.1_07863.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_1282.1_07863.t1 MYCSAFNMYKHHCNNTKATPDDYNDDNYDDYHNDNYDTGTKDRSFDGNATTTTTPTTTTTSLLEVARRVCANGVSDIVFA FDSSTTVSDRDFRNQIQFAKDITNNLNIEPNGTRVGAILYSDQIVNIMNMNEHNDRDDITSTLDKTVRSAGRNRLDLALK YIRTVSFRRGLARERAAQLAIVFTSKPTMYIHNTKKQSHRTRESGIAVIPISIGRVTEDEMIAISGTTDSSKYFKLSSTD ELNSVLAELSIEACRVPEPVISISDQSCGSRQEADIMFILDSVNAGRKNTKKVLAFMKDLVDELDVDPKKIQVGLMSAEC QDDNTGFQLNSNTNNEEVTKALSKVKGVDLSGMLKQMRRGAYSHNKGGRKEAKKIAILIVDGSLDEPIRTLTEAQRARIH GVEVIVIQVGQEEPQEELLMMCDAPKKQHFFKVPHYNQLPGMKDRLWQAICDEL |
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