Gene
| Gene Model ID | pfu_aug1.0_1283.1_07866 |
|---|---|
| Locus | scaffold1283.1 : 5858 ... 7155 : - |
| To GenomeBrowser | scaffold1283.1:5858..7155 |
| Genes list of scaffold | scaffold1283.1 |
| Synonym | NA |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_1283.1_07866.t1 | 3 | 1 | LRR_8 | 2 | 59 | 1.6e-14 | 53.4 | 9.2e-07 | 0.002 | 17.8 |
| pfu_aug1.0_1283.1_07866.t1 | 5 | 1 | LRR_4 | 3 | 38 | 1.4e-13 | 50.0 | 3.7e-06 | 0.0079 | 15.7 |
| pfu_aug1.0_1283.1_07866.t1 | 6 | 1 | LRR_1 | 26 | 41 | 2.7e-07 | 29.6 | 0.095 | 200.0 | 2.6 |
| pfu_aug1.0_1283.1_07866.t1 | 3 | 2 | LRR_8 | 50 | 108 | 1.6e-14 | 53.4 | 8.8e-13 | 1.9e-09 | 37.1 |
| pfu_aug1.0_1283.1_07866.t1 | 5 | 2 | LRR_4 | 51 | 88 | 1.4e-13 | 50.0 | 5.0e-10 | 1.1e-06 | 28.1 |
| pfu_aug1.0_1283.1_07866.t1 | 6 | 2 | LRR_1 | 51 | 70 | 2.7e-07 | 29.6 | 0.003 | 6.4 | 7.2 |
| pfu_aug1.0_1283.1_07866.t1 | 5 | 3 | LRR_4 | 72 | 110 | 1.4e-13 | 50.0 | 4.0e-08 | 8.4e-05 | 22.0 |
| pfu_aug1.0_1283.1_07866.t1 | 6 | 3 | LRR_1 | 74 | 93 | 2.7e-07 | 29.6 | 0.0008 | 1.7 | 8.9 |
| pfu_aug1.0_1283.1_07866.t1 | 3 | 3 | LRR_8 | 97 | 136 | 1.6e-14 | 53.4 | 7.3e-08 | 0.00015 | 21.3 |
| pfu_aug1.0_1283.1_07866.t1 | 6 | 4 | LRR_1 | 97 | 118 | 2.7e-07 | 29.6 | 0.00045 | 0.94 | 9.7 |
| pfu_aug1.0_1283.1_07866.t1 | 5 | 4 | LRR_4 | 122 | 136 | 1.4e-13 | 50.0 | 0.0094 | 20.0 | 4.9 |
| pfu_aug1.0_1283.1_07866.t1 | 6 | 5 | LRR_1 | 122 | 137 | 2.7e-07 | 29.6 | 0.0095 | 20.0 | 5.7 |
| pfu_aug1.0_1283.1_07866.t1 | 5 | 5 | LRR_4 | 158 | 165 | 1.4e-13 | 50.0 | 0.092 | 200.0 | 1.7 |
| pfu_aug1.0_1283.1_07866.t1 | 6 | 6 | LRR_1 | 158 | 170 | 2.7e-07 | 29.6 | 0.17 | 360.0 | 1.8 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_1283.1_07866.t1 | gi|348565077|ref|XP_003468330.1| | PREDICTED: leucine-rich repeat and fibronectin type-III domain-containing protein 4 isoform X1 [Cavia porcellus] | 7.0e-11 |
Transcript
| Transcript ID | pfu_aug1.0_1283.1_07866.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_1283.1_07866.t1 atgccttacctccacgatgtatctctacaagatgacaatattactaattttcctgccattattggtacgtttgagagact taagaatcttgtaatggacagaaacaaccttaagtttgtaagtgacgagtcggcccatgcggcaagaaggataactcatc ttagtctacgaaattcagggatatctcgcattccgggtgctttacagaatatcactgaactaacggatttagatttatca cacaatgatatacacagtatcgagcgcaaggacctccaatttctgattcatctgtctactttgaaccttaataataaccc actcatctatatttccggtgatgcgttcactcacaatggcgaactcaccaccttgcttcttcaaaacactaacttgacca aggtcccttgtgctgtacaatggatgatccgagtgagaactcctcacaacagccaacgaaatctgctcgtcgacttgacc aataataagatagaatgtaactgtggcttgtcatggatacatagcatgctgcggatcagccctcaggcgtcacttctggt aaaaggggactgtgacaccatcatcaaacccatacaagattatatagagcaagatctacctgaatgtcctaccttcttta cttgtaatagtcgctaa |
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Protein
| Protein ID | pfu_aug1.0_1283.1_07866.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_1283.1_07866.t1 MPYLHDVSLQDDNITNFPAIIGTFERLKNLVMDRNNLKFVSDESAHAARRITHLSLRNSGISRIPGALQNITELTDLDLS HNDIHSIERKDLQFLIHLSTLNLNNNPLIYISGDAFTHNGELTTLLLQNTNLTKVPCAVQWMIRVRTPHNSQRNLLVDLT NNKIECNCGLSWIHSMLRISPQASLLVKGDCDTIIKPIQDYIEQDLPECPTFFTCNSR |
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