Gene
| Gene Model ID | pfu_aug1.0_1283.1_07875 |
|---|---|
| Locus | scaffold1283.1 : 86026 ... 122681 : - |
| To GenomeBrowser | scaffold1283.1:86026..122681 |
| Genes list of scaffold | scaffold1283.1 |
| Synonym | pfu_aug2.0_9.1_29970 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug1.0_1283.1_07875.t1 | 3 | 1 | WD40 | 10 | 41 | 2.1e-20 | 71.7 | 1.0e-10 | 3.1e-07 | 30.0 |
| pfu_aug1.0_1283.1_07875.t1 | 3 | 2 | WD40 | 59 | 92 | 2.1e-20 | 71.7 | 2.1e-07 | 0.00062 | 19.5 |
| pfu_aug1.0_1283.1_07875.t1 | 3 | 3 | WD40 | 97 | 132 | 2.1e-20 | 71.7 | 1.2e-08 | 3.5e-05 | 23.4 |
| pfu_aug1.0_1283.1_07875.t1 | 1 | 1 | DUF1900 | 148 | 186 | 3.2e-11 | 42.8 | 2.0e-14 | 6.0e-11 | 42.0 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_1283.1_07875.t1 | gi|344248227|gb|EGW04331.1| | Coronin-2B [Cricetulus griseus] | 0.0 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)| Libraries | EST count |
|---|---|
| >Embryonic/Larval stages | |
| mix | 1 |
| >Adult tissues | |
Transcript
| Transcript ID | pfu_aug1.0_1283.1_07875.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_1283.1_07875.t1 gtagagttgatgccaatgcgcctcgtgtgtgtggacatgctggacaggtcctagacgtcaaatggaatccttttaatgac gacatcatcgcatcggcatcggaggattgttccgtcaagctatggcgaatacctgatggaggtcttcgtgccaatctgtc gcagtgggaggtggatttgcacggacatcagaggagggtcagttatatagaatggcatccggctgctgagaacatcctac tcagtgcaggcttcgatttccaatgcattttgtggaatgtggaacaagcagagcctgtcaatataatcagttgtcatgac gacacaattttttccgtttcctggaacaaagatggtagcctgttcaccacatcttgtaaggacaaagttctacgtgtcct tgaccccagaatgggagatgtagcagcgcacaataacttttcaggagtcatgccaaagcgaggctgtgatactagtcgtt gtgaagtcatgagattttataaacttcatgcttccaagaatttgatcgaacccatttccatgattgttccaagaaagaca gttatggaagaagaccatgagattcccttatctccagaatttttcaaatcatatctaataagtacgaactataacgttaa aattgcgagcaaaagtaatatggataatgaacaaataaaacgtttaactcctcctgtggaacaacagagtggctttttga gtgagaaaccagaaattctcggtttactttcatgcagcgaggagagaaaagcaacccatgtaaagaaaacatggtccctt caggattcgtctgttttacaagagtggcatgctggactgccacaaaacgagagagagctaaggaaagcatatttcagaca actggaggagattaatagtttaaaggaacaaatatcattaaaggacaagcgtatccgacagcttgagcaggagttatcta tcttgaagttaccatcctcagactgtggacccggccagagtgattgctag |
|
Protein
| Protein ID | pfu_aug1.0_1283.1_07875.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_1283.1_07875.t1 RVDANAPRVCGHAGQVLDVKWNPFNDDIIASASEDCSVKLWRIPDGGLRANLSQWEVDLHGHQRRVSYIEWHPAAENILL SAGFDFQCILWNVEQAEPVNIISCHDDTIFSVSWNKDGSLFTTSCKDKVLRVLDPRMGDVAAHNNFSGVMPKRGCDTSRC EVMRFYKLHASKNLIEPISMIVPRKTVMEEDHEIPLSPEFFKSYLISTNYNVKIASKSNMDNEQIKRLTPPVEQQSGFLS EKPEILGLLSCSEERKATHVKKTWSLQDSSVLQEWHAGLPQNERELRKAYFRQLEEINSLKEQISLKDKRIRQLEQELSI LKLPSSDCGPGQSDC |
|