Genome browser

OIST Marine Genomics Unit since 2008

Gene
Gene Model IDpfu_aug1.0_128324.1_42625
Locus scaffold128324.1 : 41 ... 756 : +
To GenomeBrowser scaffold128324.1:41..756
Genes list of scaffold scaffold128324.1
Synonym pfu_aug2.0_1709.1_31860

Manual annotation
Hmmer Search for Pfam
query Total ID Target From To Eval Score cEval iEval Score
pfu_aug1.0_128324.1_42625.t1 1 1 Amino_oxidase 5 98 1.5e-13 50.6 1.2e-17 1.7e-13 50.4

Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)

Libraries EST count
>Embryonic/Larval stages
mix 1
>Adult tissues

Transcript
Transcript IDpfu_aug1.0_128324.1_42625.t1
Definition-
>pfu_aug1.0_128324.1_42625.t1
atgcttggagctcaaccagaacaagaggctgtgactagtgcagttcgccagttgaaagatattcatcctgatatagaaaa
atactttgaggtgggaagggttcaagcttggaccagagacccttctgcgcaattggcttttacatatctgaatccaagtc
aataccaatactccttggagaccttattaatgacagatacccatccgttataccttgccggtgaggccttgtcatggacg
catggatggattcaaggtgctctagagtctggattgagggcagcttataacatattctgcaaatatgaaaaaccaccatc
cacgatggagtcgaaaaaactaatatga

Protein
Protein IDpfu_aug1.0_128324.1_42625.t1
Definition-
>pfu_aug1.0_128324.1_42625.t1
MLGAQPEQEAVTSAVRQLKDIHPDIEKYFEVGRVQAWTRDPSAQLAFTYLNPSQYQYSLETLLMTDTHPLYLAGEALSWT
HGWIQGALESGLRAAYNIFCKYEKPPSTMESKKLI

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