Gene
| Gene Model ID | pfu_aug1.0_12887.1_39407 |
|---|---|
| Locus | scaffold12887.1 : 11604 ... 13385 : - |
| To GenomeBrowser | scaffold12887.1:11604..13385 |
| Genes list of scaffold | scaffold12887.1 |
| Synonym | pfu_aug2.0_1708.1_28482 |
Manual annotation
| Study field | Biomineralization |
|---|---|
| Gene name | Prisilkin-39 like |
| Description | reciprocal BLASTN best hit to EU921665.1 Pinctada fucata prisilkin-39 mRNA |
| mRNA evidence |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug1.0_12887.1_39407.t1 | gi|334350827|sp|C0J7L8.1|PRSKL_PINFU | Prisilkin-39 [Pinctada fucata] | 2.0e-28 |
Expression profile
(Color code: FPKM>10&<50, blue; FPKM>50, pink)| Libraries | EST count |
|---|---|
| >Embryonic/Larval stages | |
| mix | 1 |
| >Adult tissues | |
| mantle | 1 |
| mantleEdge | 1 |
| mantlePallium | 1 |
Transcript
| Transcript ID | pfu_aug1.0_12887.1_39407.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_12887.1_39407.t1 atgaaaggattcctgacactcttgctggtttgtgctatactcagtactgggtattgtcaaagtcgtcgaagagctgcact tactggattagtagctggtgccgccattggcgctttagctagtggtggtttaggtgctggtggtttcggtgtaggaggtg tcccagtaggagttggtgcggtcggagttccagttgctgttggcggtggtataccgtatggttacggcggatatagcggg tatggctacgggtatccagccggtggatatggtggatacagctacggatatccaactggtggatatggtggatacagcta cggatatccaacgggaggatacagcggatacagctacggatatccaacgggaggatacagcggatacagctacggatatc caacgggaggatacagcggatacagctacggatatccaacgggaggatacagcggatacagctacggatatccaacggga ggatacagcggatacagctacggatatccaacgggaggatacagtggatacagctatccaacgggcggatacagtggata cagttcaaccccaggatatggatattacggctcaggctctggaatgggtggaatgcgttcaggatatagttattacagca gccccgccccatcatattacagttctggtagtatgacaccaggatacggatattacagctcaggctctggaataggagga ggaatgggttcaggatatagctattacagcagccccgccccttcatattacagttctagtgtgagtccaggatacggata ttacggctcaggctctggaatgagaggatatggttattacggtagcagcacacctatgtattacggttctagaagtacgg gttatggtcccttttcttctggattgggaggaatgggttcagggtatagttattacagcagcagcaccccatcatattac agttctggtagtatgacaccaggatacggatattacggcagtactagctatccaggatcagggtatggctcttacagtta tcgtacaactaactatcaaccctcctcttatggatattcctcttatgggaccacgtatccaggacacgggcattggcacg gtcacaaggactgttaa |
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Protein
| Protein ID | pfu_aug1.0_12887.1_39407.t1 |
|---|---|
| Definition | - |
>pfu_aug1.0_12887.1_39407.t1 MKGFLTLLLVCAILSTGYCQSRRRAALTGLVAGAAIGALASGGLGAGGFGVGGVPVGVGAVGVPVAVGGGIPYGYGGYSG YGYGYPAGGYGGYSYGYPTGGYGGYSYGYPTGGYSGYSYGYPTGGYSGYSYGYPTGGYSGYSYGYPTGGYSGYSYGYPTG GYSGYSYGYPTGGYSGYSYPTGGYSGYSSTPGYGYYGSGSGMGGMRSGYSYYSSPAPSYYSSGSMTPGYGYYSSGSGIGG GMGSGYSYYSSPAPSYYSSSVSPGYGYYGSGSGMRGYGYYGSSTPMYYGSRSTGYGPFSSGLGGMGSGYSYYSSSTPSYY SSGSMTPGYGYYGSTSYPGSGYGSYSYRTTNYQPSSYGYSSYGTTYPGHGHWHGHKDC |
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